Structure of PDB 3ddv Chain D Binding Site BS01

Receptor Information
>3ddv Chain D (length=138) Species: 226185 (Enterococcus faecalis V583) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSRTVSYFVAKPSSSEMEKLQLGPEDSILRMERIRFADDIPICFEVASIP
YSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQTISAVQASEQIAEYLEI
KRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLE
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain3ddv Chain D Residue 146 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3ddv The crystal structure of the transcriptional regulator (GntR family) from Enterococcus faecalis V583
Resolution2.65 Å
Binding residue
(original residue number in PDB)
S21 Y129
Binding residue
(residue number reindexed from 1)
S15 Y123
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006355 regulation of DNA-templated transcription

View graph for
Molecular Function

View graph for
Biological Process
External links
PDB RCSB:3ddv, PDBe:3ddv, PDBj:3ddv
PDBsum3ddv
PubMed
UniProtQ835P8

[Back to BioLiP]