Structure of PDB 3cyq Chain D Binding Site BS01

Receptor Information

>3cyq Chain D (length=132) Species: 85962 (Helicobacter pylori 26695)

GIDPFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPL
VKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSYGSTNPIAPNDSL
ENRMKNNRVEIFFSTDANDLSKIHSILDNEFN

Ligand information

• Ligand ID: AMU
• InChI: InChI=1S/C11H19NO8/c1-4(10(16)17)19-9-7(12-5(2)14)11(18)20-6(3-13)8(9)15/h4,6-9,11,13,15,18H,3H2,1-2H3,(H,12,14)(H,16,17)/t4-,6-,7-,8-,9-,11-/m1/s1
• InChIKey: MNLRQHMNZILYPY-YVNCZSHWSA-N
• SMILES:
  CACTVS 3.341: C[CH](O[CH]1[CH](O)[CH](CO)O[CH](O)[CH]1NC(C)=O)C(O)=O
  ACDLabs 10.04: O=C(O)C(OC1C(O)C(OC(O)C1NC(=O)C)CO)C
  OpenEye OEToolkits 1.5.0: CC(C(=O)O)OC1C(C(OC(C1O)CO)O)NC(=O)C
  CACTVS 3.341: C[C@@H](O[C@H]1[C@H](O)[C@@H](CO)O[C@@H](O)[C@@H]1NC(C)=O)C(O)=O
  OpenEye OEToolkits 1.5.0: C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)CO)O)NC(=O)C
• Formula: C11 H19 N O8
• Name: N-acetyl-beta-muramic acid;
  N-acetyl-muramic acid;
  BETA-N-ACETYLMURAMIC ACID
• ZINC: ZINC000004095908
• PDB chain: 3cyq Chain D Residue 5

Receptor-Ligand Complex Structure

Structure summary

• PDB: 3cyq Crystal structure of the cell wall anchor domain of MotB, a stator component of the bacterial flagellar motor: implications for peptidoglycan recognition.
• Resolution: 2.3 Å
• Binding residue (original residue number in PDB): S175 H176 Y177 S208
• Binding residue (residue number reindexed from 1): S57 H58 Y59 S90
• Annotation score: 4

External links

• PDB: RCSB:3cyq, PDBe:3cyq, PDBj:3cyq
• PDBsum: 3cyq
• UniProt: P56427|MOTB_HELPY Motility protein B (Gene Name=motB)