Structure of PDB 2vrt Chain D Binding Site BS01

Receptor Information
>2vrt Chain D (length=487) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKRMLINATQQEELRVALVDGQRLYDLDIESPEQKKANIYKGKITRIEPS
LEAAFVDYGAERHGFLPLKEIAREYFPRPNIKDVLREGQEVIVQIDKEER
GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEDDRTELKEALASLEL
PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQE
SNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT
GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARDI
EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE
AVRQDRARIQISHISRFGLLEMSRQRLSSHHVCPRCSGTGTVRDNESLSL
SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC
VIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2vrt The Crystal Structure of the Escherichia Coli Rnase E Apoprotein and a Mechanism for RNA Degradation.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		G137 I139 S140 R141 R169 T170
Binding residue
(residue number reindexed from 1)		G128 I130 S131 R132 R159 T160
Enzymatic activity
Enzyme Commision number 3.1.26.12: ribonuclease E.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0004540 RNA nuclease activity
GO:0008995 ribonuclease E activity
Biological Process
GO:0006396 RNA processing

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Molecular Function
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Biological Process
External links
PDB RCSB:2vrt, PDBe:2vrt, PDBj:2vrt
PDBsum2vrt
PubMed18682225
UniProtP21513|RNE_ECOLI Ribonuclease E (Gene Name=rne)

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