Structure of PDB 2oby Chain D Binding Site BS01
Receptor Information
>2oby Chain D (length=334) Species:
9606
(Homo sapiens) [
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IPMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQ
GQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQY
VTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHA
GLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFS
EATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDING
PLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLL
PVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ
Ligand information
Ligand ID
NAP
InChI
InChI=1S/C21H28N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1-4,7-8,10-11,13-16,20-21,29-31H,5-6H2,(H7-,22,23,24,25,32,33,34,35,36,37,38,39)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
InChIKey
XJLXINKUBYWONI-NNYOXOHSSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O
CACTVS 3.341
NC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P@@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O
OpenEye OEToolkits 1.5.0
c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)OP(=O)(O)O)O)O)O)C(=O)N
Formula
C21 H28 N7 O17 P3
Name
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE;
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
ChEMBL
CHEMBL295069
DrugBank
DB03461
ZINC
PDB chain
2oby Chain D Residue 1403 [
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Receptor-Ligand Complex Structure
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PDB
2oby
Crystal structure of human P53 inducible oxidoreductase (TP53I3, PIG3)
Resolution
3.0 Å
Binding residue
(original residue number in PDB)
N40 R41 E123 T127 A148 S151 G152 V153 A172 G173 K177 Y192 Y238 M241 L265 L266 M317 N322
Binding residue
(residue number reindexed from 1)
N42 R43 E125 T129 A150 S153 G154 V155 A174 G175 K179 Y194 Y240 M243 L267 L268 M319 N324
Annotation score
4
Enzymatic activity
Enzyme Commision number
1.6.5.5
: NADPH:quinone reductase.
Gene Ontology
Molecular Function
GO:0003824
catalytic activity
GO:0003960
NADPH:quinone reductase activity
GO:0016491
oxidoreductase activity
GO:0042803
protein homodimerization activity
GO:0048038
quinone binding
GO:0070402
NADPH binding
Biological Process
GO:0006739
NADP metabolic process
Cellular Component
GO:0005829
cytosol
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:2oby
,
PDBe:2oby
,
PDBj:2oby
PDBsum
2oby
PubMed
UniProt
Q53FA7
|QORX_HUMAN Quinone oxidoreductase PIG3 (Gene Name=TP53I3)
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