Structure of PDB 2lbu Chain D Binding Site BS01

Receptor Information
>2lbu Chain D (length=71) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RNSAKDIRTEERARVQLGNVVTAAALHGGIRISDQTTNSVETVVGKGESR
VLIGNEYGGKGFWDNHHHHHH
Ligand information
Ligand IDCGO
InChIInChI=1S/C32H24N6O6S2.2Na/c33-31-25-7-3-1-5-23(25)29(45(39,40)41)17-27(31)37-35-21-13-9-19(10-14-21)20-11-15-22(16-12-20)36-38-28-18-30(46(42,43)44)24-6-2-4-8-26(24)32(28)34;;/h1-18H,33-34H2,(H,39,40,41)(H,42,43,44);;/q;2*+1/p-2/b37-35+,38-36+;;
InChIKeyIQFVPQOLBLOTPF-HKXUKFGYSA-L
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.2c1ccc2c(c1)c(cc(c2N)N=Nc3ccc(cc3)c4ccc(cc4)N=Nc5cc(c6ccccc6c5N)S(=O)(=O)[O-][Na+])S(=O)(=O)[O-][Na+]
OpenEye OEToolkits 1.7.2c1cc2c(cc(c(c2cc1)N)/N=N/c3ccc(cc3)c4ccc(cc4)/N=N/c5c(c6c(c(c5)S(=O)(=O)[O-][Na+])cccc6)N)S(=O)(=O)[O-][Na+]
CACTVS 3.370Nc1c(cc(c2ccccc12)[S](=O)(=O)[O-][Na+])N=Nc3ccc(cc3)c4ccc(cc4)N=Nc5cc(c6ccccc6c5N)[S](=O)(=O)[O-][Na+]
ACDLabs 12.01[Na+][O-]S(=O)(=O)c5cc(/N=N/c1ccc(cc1)c4ccc(/N=N/c3c(c2ccccc2c(c3)S(=O)(=O)[O-][Na+])N)cc4)c(N)c6c5cccc6
FormulaC32 H22 N6 Na2 O6 S2
Namesodium 3,3'-(1E,1'E)-biphenyl-4,4'-diylbis(diazene-2,1-diyl)bis(4-aminonaphthalene-1-sulfonate);
congo red
ChEMBLCHEMBL429694
DrugBank
ZINC
PDB chain2lbu Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2lbu The Amyloid-Congo Red Interface at Atomic Resolution.
ResolutionN/A
Binding residue
(original residue number in PDB)
S227 A228 K229 S263 V264 E265
Binding residue
(residue number reindexed from 1)
S3 A4 K5 S39 V40 E41
Annotation score1
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:2lbu, PDBe:2lbu, PDBj:2lbu
PDBsum2lbu
PubMed21591034
UniProtQ03689|HETS_PODAS Heterokaryon incompatibility protein s (Gene Name=het-s)

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