Structure of PDB 2jbg Chain D Binding Site BS01
Receptor Information
>2jbg Chain D (length=121) Species:
316407
(Escherichia coli str. K-12 substr. W3110) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
NKPGKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRK
KFWEEVSKDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEV
YDMDAISVVTPKRHIDIHRGK
Ligand information
Ligand ID
ZN
InChI
InChI=1S/Zn/q+2
InChIKey
PTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
Formula
Zn
Name
ZINC ION
ChEMBL
CHEMBL1236970
DrugBank
DB14532
ZINC
PDB chain
2jbg Chain D Residue 1577 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
2jbg
The Conserved Asparagine in the Hnh Motif Serves an Important Structural Role in Metal Finger Endonucleases.
Resolution
2.2 Å
Binding residue
(original residue number in PDB)
H544 H569 H573
Binding residue
(residue number reindexed from 1)
H97 H114 H118
Annotation score
4
Enzymatic activity
Catalytic site (original residue number in PDB)
R538 E542 H544 H545 H569 H573
Catalytic site (residue number reindexed from 1)
R91 E95 H97 H98 H114 H118
Enzyme Commision number
3.1.-.-
Gene Ontology
Molecular Function
GO:0004519
endonuclease activity
GO:0005102
signaling receptor binding
Biological Process
GO:0009617
response to bacterium
GO:0019835
cytolysis
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:2jbg
,
PDBe:2jbg
,
PDBj:2jbg
PDBsum
2jbg
PubMed
17368670
UniProt
Q47112
|CEA7_ECOLX Colicin-E7 (Gene Name=colE7)
[
Back to BioLiP
]