Structure of PDB 2gdf Chain D Binding Site BS01

Receptor Information

>2gdf Chain D (length=237) Species: 192415 (Macropsychanthus violaceus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

ADTIVAVELDSYPNTDIGDPNYPHIGIDIKSIRSKSTARWNMQTGKVGTV
HISYNSVAKRLSAVVSYSGSSSTTVSYDVDLNNVLPEWVRVGLSATTGLY
KETNTILSWSFTSKLKTNSAADENSLHFSFHKFSQNPKDLILQGDAFTDS
DGNLELTKVSSSGDPQGNSVGRALFYAPVHIWEKSAVVASFDATFTFLIK
SPDREPADGITFFIANTDTSIPSGSGGRLLGLFPDAN

Ligand information

Ligand ID

InChI

InChI=1S/Mn/q+2

InChIKey

WAEMQWOKJMHJLA-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mn+2]
CACTVS 3.341	[Mn++]

Formula

Name

MANGANESE (II) ION

PDB chain

2gdf Chain D Residue 1301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	2gdf Crystal structure of Dioclea violacea seed lectin
Resolution	2.4 Å
Binding residue (original residue number in PDB)	E8 D10 D19 H24
Binding residue (residue number reindexed from 1)	E8 D10 D19 H24
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0005537	D-mannose binding
GO:0030246	carbohydrate binding
GO:0042802	identical protein binding
GO:0046872	metal ion binding
GO:0090729	toxin activity

	Biological Process
GO:0008150	biological_process
GO:0035821	modulation of process of another organism

	Cellular Component
GO:0005575	cellular_component

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:2gdf, PDBe:2gdf, PDBj:2gdf
PDBsum	2gdf
PubMed
UniProt	P08902\|LECA_DIOGR Lectin alpha chain

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