Structure of PDB 2d0v Chain D Binding Site BS01

Receptor Information
>2d0v Chain D (length=597) Species: 53399 (Hyphomicrobium denitrificans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NDKLIELSNSNENWVMPGKNYDSNNYSTSTQINVDNVKQLKHAWSFSTGE
LHGHEGAPLVIGDVMYVHSSFPNKTFALDLNDPGHILWQHSPKQDPAARS
VACCDLVNRGLAYWPGDDKTPSLIIKTQLDGHLVALNAKTGEEFWKVENG
DIKVGQTLTQAPYVVHDLAIVGSSGAELGVRGHVTAYNVRTGEQAWRYYA
TGPDAEIGLADDFNSANPHYGQKGLGTATWEGDAWKIGGGTNWGWYAYDP
AANLIYYGSGNPAPWNETMRPGDNKWTMTITARDADTGKMKFGYQKTPHD
EWDFAGVNVIMLSEQTDKTGKKRKLLTHPDRNGIVYTLDRENGDLISADK
LDDTVNVFKTVDLKTGLPVRDPEYGTRMDHKGTDICPSAMGYHNQGHDSY
DPQKQLFFMGINHICMDWEPFMLPYRAGQFFVGATLWMYPGPKGDRQNYL
GLGQIKAYNAITNEYKWQHMERFSVWGGTLATAGNLVFYGTLDGFLKARN
SDTGELVWKHKLPSGVIGYPMTYEHKGVQYIAVMSGVGGWPGVGLVFDLQ
DPTAGLGAVGAFKNLQNYTQMGGSLEVFSLDGKNPYDDVNVGEYEKG
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2d0v Chain D Residue 775 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB2d0v Crystal structures of cytochrome c(L) and methanol dehydrogenase from Hyphomicrobium denitrificans: structural and mechanistic insights into interactions between the two proteins
Resolution2.49 Å
Binding residue
(original residue number in PDB)		E177 N261
Binding residue
(residue number reindexed from 1)		E177 N261
Annotation score4
Enzymatic activity
Enzyme Commision number 1.1.99.8: Transferred entry: 1.1.2.7 and 1.1.2.8.
Gene Ontology
Molecular Function
GO:0005509 calcium ion binding
GO:0016491 oxidoreductase activity
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0046872 metal ion binding
Cellular Component
GO:0016020 membrane
GO:0030288 outer membrane-bounded periplasmic space

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:2d0v, PDBe:2d0v, PDBj:2d0v
PDBsum2d0v
PubMed16533029
UniProtQ4AE26

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