Structure of PDB 2d00 Chain D Binding Site BS01

Receptor Information
>2d00 Chain D (length=109) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MVPVRMAVIADPETAQGFRLAGLEGYGASSAEEAQSLLETLVERGGYALV
AVDEALLPDPERAVERLMRGRDLPVLLPIAGLKEAFQGHDVEGYMRELVR
KTIGFDIKL
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain2d00 Chain D Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB2d00 Structure of a central stalk subunit F of prokaryotic V-type ATPase/synthase from Thermus thermophilus
Resolution2.2 Å
Binding residue
(original residue number in PDB)		G27 E33
Binding residue
(residue number reindexed from 1)		G27 E33
Annotation score1
Enzymatic activity
Enzyme Commision number 3.6.3.14: Transferred entry: 7.1.2.2.
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
GO:0046961 proton-transporting ATPase activity, rotational mechanism
Biological Process
GO:0006754 ATP biosynthetic process
GO:0034220 monoatomic ion transmembrane transport
GO:0042777 proton motive force-driven plasma membrane ATP synthesis
GO:1902600 proton transmembrane transport

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:2d00, PDBe:2d00, PDBj:2d00
PDBsum2d00
PubMed16281059
UniProtP74903|VATF_THET8 V-type ATP synthase subunit F (Gene Name=atpF)

[Back to BioLiP]