Structure of PDB 1t6u Chain D Binding Site BS01

Receptor Information
>1t6u Chain D (length=116) Species: 1902 (Streptomyces coelicolor) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAEL
AKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKA
LDYIAQIDKIFWETKK
Ligand information
Ligand IDNI
InChIInChI=1S/Ni/q+2
InChIKeyVEQPNABPJHWNSG-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ni++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Ni+2]
FormulaNi
NameNICKEL (II) ION
ChEMBL
DrugBankDB14204
ZINC
PDB chain1t6u Chain D Residue 204 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1t6u Nickel superoxide dismutase structure and mechanism.
Resolution1.3 Å
Binding residue
(original residue number in PDB)
H1 C2 C6
Binding residue
(residue number reindexed from 1)
H1 C2 C6
Annotation score1
Enzymatic activity
Enzyme Commision number 1.15.1.1: superoxide dismutase.
Gene Ontology
Molecular Function
GO:0004784 superoxide dismutase activity
GO:0016151 nickel cation binding
GO:0016209 antioxidant activity

View graph for
Molecular Function
External links
PDB RCSB:1t6u, PDBe:1t6u, PDBj:1t6u
PDBsum1t6u
PubMed15209499
UniProtP80735|SODN_STRCO Superoxide dismutase [Ni] (Gene Name=sodN)

[Back to BioLiP]