Structure of PDB 1on9 Chain D Binding Site BS01

Receptor Information
>1on9 Chain D (length=504) Species: 1744 (Propionibacterium freudenreichii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKLASTMEGRVEQLAEQRQVIEAGGGERRVEKQHSQGKQTARERLNNLLD
PHSFDEVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFT
VMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARIQEGIDSLSGYG
KMFFANVKLSGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP
QVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDDDAAELIAKKLLSFL
PQNNTEEASFVNPNNDVSPNTELRDIVPIDGKKGYDVRDVIAKIVDWGDY
LEVKAGYATNLVTAFARVNGRSVGIVANQPSVMSGCLDINASDKAAEFVN
FCDSFNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITV
VLRKAYGGSYLAMCNRDLGADAVYAWPSAEIAVMGAEGAANVIFAMKIEE
YQNAFNTPYVAAARGQVDDVIDPADTRRKIASALEMYATKRQTRPAKKHG
NFPC
Ligand information
Ligand IDMCA
InChIInChI=1S/C25H40N7O19P3S/c1-12(23(37)38)24(39)55-7-6-27-14(33)4-5-28-21(36)18(35)25(2,3)9-48-54(45,46)51-53(43,44)47-8-13-17(50-52(40,41)42)16(34)22(49-13)32-11-31-15-19(26)29-10-30-20(15)32/h10-13,16-18,22,34-35H,4-9H2,1-3H3,(H,27,33)(H,28,36)(H,37,38)(H,43,44)(H,45,46)(H2,26,29,30)(H2,40,41,42)/t12-,13-,16-,17-,18+,22-/m1/s1
InChIKeyMZFOKIKEPGUZEN-AGCMQPJKSA-N
SMILES
SoftwareSMILES
CACTVS 3.341C[CH](C(O)=O)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
ACDLabs 10.04O=C(O)C(C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)C
CACTVS 3.341C[C@H](C(O)=O)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23
OpenEye OEToolkits 1.5.0C[C@H](C(=O)O)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O
OpenEye OEToolkits 1.5.0CC(C(=O)O)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O
FormulaC25 H40 N7 O19 P3 S
NameMETHYLMALONYL-COENZYME A
ChEMBL
DrugBankDB04045
ZINCZINC000008551337
PDB chain1on9 Chain D Residue 4004 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1on9 Transcarboxylase 12S crystal structure: hexamer assembly and substrate binding to a multienzyme core
Resolution2.0 Å
Binding residue
(original residue number in PDB)		R35 F105 M108 G109 S111
Binding residue
(residue number reindexed from 1)		R29 F99 M102 G103 S105
Annotation score4
Enzymatic activity
Catalytic site (original residue number in PDB) A143 G181 G182 F374 G414 S415
Catalytic site (residue number reindexed from 1) A137 G175 G176 F368 G408 S409
Enzyme Commision number 2.1.3.1: methylmalonyl-CoA carboxytransferase.
Gene Ontology
Molecular Function
GO:0003989 acetyl-CoA carboxylase activity
GO:0004658 propionyl-CoA carboxylase activity
GO:0016740 transferase activity
GO:0016874 ligase activity
GO:0047154 methylmalonyl-CoA carboxytransferase activity
Biological Process
GO:0006633 fatty acid biosynthetic process
Cellular Component
GO:0009317 acetyl-CoA carboxylase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1on9, PDBe:1on9, PDBj:1on9
PDBsum1on9
PubMed12743028
UniProtQ8GBW6|12S_PROFR Methylmalonyl-CoA carboxyltransferase 12S subunit

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