Structure of PDB 1nkw Chain D Binding Site BS01

Receptor Information
>1nkw Chain D (length=178) Species: 1299 (Deinococcus radiodurans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QQLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAID
KAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLE
KLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYDMVDKTRG
MDITIVTTAKTDEEARALLQSMGLPFRK
Ligand information
>1nkw Chain 9 (length=118) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cccccgugcccauagcacuguggaaccaccccaccccaugccgaacuggg
ucgugaaacacagcagcgccaaugauacucggaccgcagggucccggaaa
agucggucagcgcggggg
<<<<<<<<<.....<<.<<<<<....<<<<<<<.............>>>>
..>>>...>>>>>..>><<<.......<<.<<<<<....>>>>>.>>...
....>>>..>>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1nkw High resolution structure of the large ribosomal subunit from a mesophilic eubacterium
Resolution3.1 Å
Binding residue
(original residue number in PDB)		A27 V89
Binding residue
(residue number reindexed from 1)		A26 V88
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1nkw, PDBe:1nkw, PDBj:1nkw
PDBsum1nkw
PubMed11733066
UniProtQ9RXJ0|RL5_DEIRA Large ribosomal subunit protein uL5 (Gene Name=rplE)

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