Structure of PDB 1i96 Chain D Binding Site BS01

Receptor Information
>1i96 Chain D (length=208) Species: 274 (Thermus thermophilus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRP
SDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRL
DNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK
SRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR
Ligand information
>1i96 Chain A (length=1514) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uguuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaa
gacaugcaagucgugcgggccgcgggguuuuacuccguggucagcggcgg
acgggugaguaacgcgugggugaccuacccggaagagggggacaacccgg
ggaaacucgggcuaaucccccauguggacccgccccuuggggugugucca
aagggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguuggu
gggguaauggcccaccaaggcgacgacggguagccggucugagaggaugg
ccggccacaggggcacugagacacgggccccacuccuacgggaggcagca
guuaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuug
gaggaagaagcccuucgggguguaaacuccugaacccgggacgaaacccc
cgacgaggggacugacgguaccgggguaauagcgccggccaacuccgugc
cagcagccgcgguaauacggagggcgcgagcguuacccggauucacuggg
cguaaagggcguguaggcggccuggggcgucccaugugaaagaccacggc
ucaaccgugggggagcgugggauacgcucaggcuagacggugggagaggg
ugguggaauucccggaguagcggugaaaugcgcagauaccgggaggaacg
ccgauggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaa
gcguggggagcaaaccggauuagauacccggguaguccacgcccuaaacg
augcgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaag
cgcgccgccuggggaguacggccgcaaggcugaaacucaaaggaauugac
gggggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcga
agaaccuuaccaggccuugacaugcuagggaacccgggugaaagccuggg
gugccccgcgaggggagcccuagcacaggugcugcauggccgucgucagc
ucgugccgugagguguuggguuaagucccgcaacgagcgcaacccccgcc
guuaguugccagcgguucggccgggcacucuaacgggacugcccgcgaaa
gcgggaggaaggaggggacgacgucuggucagcauggcccuuacggccug
ggcgacacacgugcuacaaugcccacuacaaagcgaugccacccggcaac
ggggagcuaaucgcaaaaaggugggcccaguucggauuggggucugcaac
ccgaccccaugaagccggaaucgcuaguaaucgcggaucagccaugccgc
ggugaauacguucccgggccuuguacacaccgcccgucacgccaugggag
cgggcucuacccgaagucgccgggagccuacgggcaggcgccgaggguag
ggcccgugacuggggcgaagucguaacaagguagcuguaccggaaggugc
ggcuggaucaccuc
.......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..
<<<.<<<..<<<..<<.<<<<<<<<<<.....>>>>>>>>>>.>>>>>..
....<<.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<
......>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>
..<<<<...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<
<<<.......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>..
.>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>
>>>>........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<
<<<......<<<<....>>>>.....>>>>....<<<<<........<<<
<.....>>>>..........>>>>>......<<<<<(((...<<<<<...
..<<.)))>>.......>>>>>>>>>>..>>>>>>>>>..........<<
<((.....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.
....>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<
<<<<....<<<<<<<.<..<<<......>>>.....>.>>>>>>>.....
......<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....
<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>........
..<<<<<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>
>>>>>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<
<.<<<<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>.
.........<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>
...<<<......>>>..>>>>>>>>.<<<.<<<..<<<<<<.......<<
<<<<<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<
<<<<<...<...<<<.....>>>.>....>>>>>>>.....<<<<<....
>>>>>........>>>>.........>>>...>>>>>>>>>...>>>>>>
>...>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>
>>>..>>....>>>.....>>>>>>>......<....<<<<<<<......
..>>>>>>>....>.....>>>>>>....<<<<<<<..........>>>>
>>>......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<...<
<<<<<<<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>
>>>>>>>...>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>
>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1i96 Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.
Resolution4.2 Å
Binding residue
(original residue number in PDB)		G2 G41 Q116 R209
Binding residue
(residue number reindexed from 1)		G1 G40 Q115 R208
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1i96, PDBe:1i96, PDBj:1i96
PDBsum1i96
PubMed11296217
UniProtP80373|RS4_THET8 Small ribosomal subunit protein uS4 (Gene Name=rpsD)

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