Structure of PDB 1de6 Chain D Binding Site BS01

Receptor Information
>1de6 Chain D (length=416) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPE
GSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESD
TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADD
SIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQ
RLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYMGYATSR
QTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLD
DETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRA
LLEPTAELRKLEAPGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSE
WLESVRAYEKEILSRR
Ligand information
Ligand IDRNS
InChIInChI=1S/C6H12O5/c1-3(8)5(10)6(11)4(9)2-7/h2-6,8-11H,1H3/t3-,4-,5-,6-/m0/s1
InChIKeyPNNNRSAQSRJVSB-BXKVDMCESA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C[C@@H]([C@@H]([C@H]([C@H](C=O)O)O)O)O
ACDLabs 10.04O=CC(O)C(O)C(O)C(O)C
OpenEye OEToolkits 1.5.0CC(C(C(C(C=O)O)O)O)O
CACTVS 3.341C[CH](O)[CH](O)[CH](O)[CH](O)C=O
CACTVS 3.341C[C@H](O)[C@H](O)[C@@H](O)[C@@H](O)C=O
FormulaC6 H12 O5
NameL-RHAMNOSE
ChEMBL
DrugBankDB02961
ZINCZINC000002038606
PDB chain1de6 Chain D Residue 4462 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB1de6 The structure of rhamnose isomerase from Escherichia coli and its relation with xylose isomerase illustrates a change between inter and intra-subunit complementation during evolution.
Resolution2.1 Å
Binding residue
(original residue number in PDB)		I67 W193 E234 K236 H270 D334 F336
Binding residue
(residue number reindexed from 1)		I57 W183 E224 K226 H260 D324 F326
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) W193 E234 K236 D267 H270 H294 D302 D304 D334
Catalytic site (residue number reindexed from 1) W183 E224 K226 D257 H260 H284 D292 D294 D324
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Gene Ontology
Molecular Function
GO:0008270 zinc ion binding
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0033296 rhamnose binding
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
GO:0051289 protein homotetramerization
Cellular Component
GO:0005737 cytoplasm
GO:0032991 protein-containing complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:1de6, PDBe:1de6, PDBj:1de6
PDBsum1de6
PubMed10891278
UniProtP32170|RHAA_ECOLI L-rhamnose isomerase (Gene Name=rhaA)

[Back to BioLiP]