Structure of PDB 6rxy Chain Ci Binding Site BS01

Receptor Information
>6rxy Chain Ci (length=115) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LVFGVARIFASFNDTFVHVTDLSGRETICRVTGGMKVKADRDESSPYAAM
LAAQDVAARCKELGITALHIKIRATGGNGTKTPGPGAQSALRALARSGMK
IGRIEDVTPTPSDST
Ligand information
>6rxy Chain C1 (length=1106) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggggauguccgggucgcccugggcaccucucccggcagccuucgcggg
cagccguagucccgguucauacgucgccgcaaucgcgaggggaccaacgg
guaaccguuccuccaagcggucgccggcgagcaccaccccagccccgcgc
cgcccccagcgcaccgcgcgcaggggggccggcgcggcaucugggaagac
uccuaaggcgcaagggaauaccccgugcgccggggguugggcucuguggg
ugcuuggccgcuggccagaccuacuucaaagccaccggggguaccuaccg
guugucucggucgggccuccucuuggggcgccuaggcggugucuucgggu
cgcgugcagccucccguccucgccugccgacagcgcucuggggaauucag
gaggggaaagcagaugugccccgcggcgagacuggcgcaccgccggacga
gcugcuggggcacgcggguacgcuagccgcacgauaguuaccugguugau
ucugcuagucauaugcuugucucaaaugacaauaaauacugauacagggc
ucuuucgggucuuguaauuggaaugaguacaauuuaaaucccuuaacgag
gaacaauuggagggcaagucuggugccagcagccgcgguaauuccagcuc
caauagcguauauugcucguaguugaaccugauuaauagggacagucggg
ggcgucaguauucaauugucagaggugaaauucuuggauuuauugaagac
uaacaacugcgaaagcauucgccaaggauguuuucauuaaucaggaacga
uuagggaucggacggcguuuauuuuugacccguucggcaccuuacgauaa
aucaaaaggaguauggucgcaaggcugaaaaauugacggaagggcaccac
cagggguggagccugcgcgcgcgcuacacugacagagccagcgaguacuc
ccuuggccgagaggcccggguaaacucugucgugcugaggaaucccuagu
aagcgcaagucaucagcuugcguugauuacgucccugcccuuuguacaca
ccgcccgucgcuacuaccgauagaggaaguaggucuccguaggugaaccu
gcggag
<<<<<<.<..<<<<<....>>>>>..>.>>>>>><<<<.<<<<....>>>
>.>>>>.................<<<<<<<.<<<<<..<<<<...<<<<<
....>>>>>.>>>>..>>>>>.>>.>>>>>....<..<<<<<..<<<<<<
<<<<<<<.<<<<.....>>>>..>>>>>.>>>>>>>>...>>>>>..>..
......<<<<<<.<<<.....>>>.>>>>>>...................
......<<<...>>>.....................<<<<<..<<<<<<<
<.....>>>>>.>>>>>>>>.....<<<<<<...<<<<<<<....<<<<.
.<<.....>>..>>>>....>>>>.>>>....>>>>>>............
...............<<<<<<<<<<<<..<.<<<<<.....>>>>>.>..
>>>>>.>>>>>>><<<<.........>>>>....................
.......<<.<<<<<<...<.<<....>...>.>....<<<<<<<<<<<<
<<....>>>>>>>>>.>>>>>.....<<..<...........>..>>...
......<<<<<<.......<<<....>>>..................>>>
>>>..>>>>>>>>.<.<<...<<<.<<.....>>....<<<<<<.<<...
<<<<..<<<.<<<<<<.....<<<......>>>........>>>>>>.>>
>.......<<....>>...>>>>..>>.>>>.>>>...>>>...>>.>..
...<<..<<<<<<<<.<<<.......>>>>>>>>>>>..>>.....<...
.>................................<<<<<<<<<<<<..<<
.<<<<<<..<<<.<<<..>>>.>>>.....<<<<<<<.............
.<<.<<<<....>>>>.>>.....>>>>>>>..........>>>>>>...
.<<<<<<<<.......>>>>>>>>......>>...>>>>>>>........
....>>>>>..<<<<.<<......>>.>>>>...<<<<<<<<<....>>>
>>>>>>
Receptor-Ligand Complex Structure
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PDB6rxy Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Resolution4.7 Å
Binding residue
(original residue number in PDB)		R31 N37 D38 F40 H42 G48 R49 T51 R54 T56 G58 D64 R65 R97 G101 P133 T134 P135 S136 D137
Binding residue
(residue number reindexed from 1)		R7 N13 D14 F16 H18 G24 R25 T27 R30 T32 G34 D40 R41 R73 G77 P109 T110 P111 S112 D113
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6rxy, PDBe:6rxy, PDBj:6rxy
PDBsum6rxy
PubMed31378463
UniProtG0SFL1

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