Structure of PDB 6xu8 Chain Cb Binding Site BS01

Receptor Information
>6xu8 Chain Cb (length=75) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKSKNHTNHNQNKKAHRNGIKRPLRKRHESTLGMDVKFLINQRYARKGNL
SREESVKRYNERIASQKGKPKPVTL
Ligand information
>6xu8 Chain A5 (length=3703) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuauauacaaccucaacucauaugggacuacccccugaauuuaagcauau
uaauuaggggaggaaaagaaacuaacaaggauuuucuuaguagcggcgag
cgaaaagaaaacaguucagcacuaagucacuuugucuauauggcaaaugu
gagaugcaguguauggagcgucaauauucuaguaugagaaauuaacgauu
uaaguccuucuuaaaugaggccauuuacccauagagggugccaggcccgu
auaacguuaaugauuacuagaugauguuuccaaagagucguguugcuuga
uagugcagcacuaagugggugguaaacuccaucuaaaacuaaauauaacc
augagaccgauaguaaacaaguaccgugagggaaaguugaaaagaacucu
gaauagagaguuaaacaguacgugaaacugcuuagagguuaagcccgaug
aaccugaauauccguuauggaaaauucaucauuaaaauuguaauauuuaa
auaauauuaugagaauagugugcauuuuuuccauauaaggacauuguaau
cuauuagcauauaccaaauuuaucauaaaauauaacuuauaguuuauucc
aauuaaauugcuugcauuuuaacacagaauaaauguuauuaauuugauaa
agugcugauagauuuauaugauuacagugcguuaauuuuucggaauuaua
uaauggcauaauuaucauugauuuuuguguuuauuauaugcacuuguaug
auuaacaaugcgaaagauucaggauaccuucgggacccgucuugaaacac
ggaccaaggagucuaacauaugugcaaguuauugggauauaaaccuaaua
gcguaauuaacuugacuaauaaugggauuaguuuuuuagcuauuuauagc
uaauuaacacaaucccggggcguucuauauaguuauguauaauguauauu
uauauuauuuaugccucuaacuggaacguaccuugagcauauaugcugug
acccgaaagauggugaacuauacuugaucagguugaagucaggggaaacc
cugauggaagaccgaaacaguucugacgugcaaaucgauugucagaauug
aguauaggggcgaaagaccaaucgaaccaucuaguagcugguuccuuccg
aaguuucccucaggauagcuggugcauauauuauauaaaauaaucuuauc
ugguaaagcgaaugauuagaggccuuagggucgaaacgaucuuaaccuau
ucucaaacuuuaaauggguaagaaccuuaacuuucuugauaugaagauca
agguuaugauauaaaugucccagugggccacuuuugguaagcagaacugg
cgcugugggaugaaccaaacguaauguuacgugcccaaauuaacaacuca
ugcagauaccaugaaaggcguugguugcuuaaaacagcaggacggugauc
auggaagucgaaauccgcuaaggaguguguaacaacucaccugccgaagc
aacuagcccuuaaaauggauggcgcuuaaguuguauaccuauacauuacc
gcuaaaguagaugauuuauauuacuugugauauaaauuuugaaacuuuag
ugaguaggaagguacaaugguaugcguagaaguguuuggcguaagccugc
auggagcugccauugguacagaucuugguggauaguagcaaauaaucgaa
ugagagccuuggaggacugaaguggagaaggguuucgugugaacaguggu
ugaucacgaguuagucgguccuaaguucaaggcgaaagcgaaaauuuuca
aguaaaacauaauuuugaacgaaagggaauacgguuccaauuccguaacc
uguugaguauccguuuguuauuaaauaugggccucgugcucauccuggca
acaggaacgaccauaaagaagccgucgagagauaucggaagaguuuucuu
uucuguuuuauagccguacuaccauggaagucuuucgcagagagauaugg
uagaugggcuagaagagcaugacauauacuguugugucgauauuuucucc
ucggaccuugaaaauuuaugguggggacacgcaaacuucucaacaggccg
uaccaauauccgcagcuggucuccaaggugaagagucucuagucgauaga
auaauguagguaagggaagucggcaaauuagauccguaacuucgggauaa
ggauuggcucugaagauugagauagucggccuugauugggaaacuggaac
uuucuugcuaaauuauaacgauuaucaauuaacaaucaauucagaacugg
cacggacuuggggaauccgacugucuaauuaaaacaaagcauugugaugg
cccuagcggguguugacacaaugugauuucugcccagugcucugaauguc
aaagugaagaaauucaaguaagcgcgggucaacggcgggaguaacuauga
cucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcauga
auggauuaacgagauuccuacugucccuaucuacuaucuagcgaaaccac
agccaagggaacgggcuuggaauaauuagcggggaaagaagacccuuuug
agcuugacucuaaucuggcaguguaaggagacauaagagguguagaauaa
gugggagauauuagaccucgguuugguaucgucaaugaaauaccacuacu
cuuauuguuuccuuacuuacuugauuaaauggaacguguaucauuuccua
gauuggguuuugaugcaagcuucuugaucaaaguaucacgaguuuguuau
auaaucgcaaacaaauuugguauaacuccaauuacucagguaugauccaa
uucaaggacauugccagguagggaguuugacuggggcgguacaucucuca
aauaauaacggaggugucccaaggccagcucagugcggacagaaaccaca
cauagagcaaaagggcaaaugcugacuugaucucgguguucaguacacac
agggacagcaaaagcucggccuaucgauccuuuugguuuaaagaguuuuu
aacaagaggugucagaaaaguuaccauagggauaacuggcuuguggcggc
caagcguucauagcgacgucgcuuuuugauccuucgaugucggcucuucc
uaucauugugaagcaaaauucaccaagcguuggauuguucacccaugcaa
gggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacccu
acuaaugacaaaacguuguugcgacagcauuccugcguaguacgagagga
acccgcagguacggaccaauggcacaauacuuguucgagcgaacaguggu
augacgcuacguccguuggauuaugccugaacgccucuaaggucguaucc
gugcuggacugcaaugauaaauaaggggcaauuugcauuguauggcuucu
aaaccauuuaaaguuuauaauuuacuuuauaaacgacaauggaugugaug
ccaauguaauuuguaacauaguaaauugggaggaucuucgaucaccugau
gccgcgcuaguuacauauaaaagcauuauuuaauacaaugacaaagccua
gaaucaauuguaaacgacuuuuguaacaggcaagguguuguaagugguug
agcagcugccauacugcgauccacugaagcuuauccuuugcuugaugauu
cga
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>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xu8 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
K3 S4 K5 N6 H7 T8 N9 H10 N11 Q12 K14 K15 R18 N19 R23 R26 K27 R28 H29 S31 T32 V37 K38 I41 N42 Q43 R44 Y45 A46 R47 G49 R53 E54 V57 Y60 N61 I64 K70 V74 L76
Binding residue
(residue number reindexed from 1)
K2 S3 K4 N5 H6 T7 N8 H9 N10 Q11 K13 K14 R17 N18 R22 R25 K26 R27 H28 S30 T31 V36 K37 I40 N41 Q42 R43 Y44 A45 R46 G48 R52 E53 V56 Y59 N60 I63 K69 V73 L75
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:6xu8, PDBe:6xu8, PDBj:6xu8
PDBsum6xu8
PubMed34283226
UniProtQ24154|RL29_DROME Large ribosomal subunit protein eL29 (Gene Name=RpL29)

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