Structure of PDB 6xu8 Chain CW Binding Site BS01

Receptor Information
>6xu8 Chain CW (length=60) Species: 7227 (Drosophila melanogaster) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTW
TVLYRRKHRK
Ligand information
>6xu8 Chain A5 (length=3703) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuauauacaaccucaacucauaugggacuacccccugaauuuaagcauau
uaauuaggggaggaaaagaaacuaacaaggauuuucuuaguagcggcgag
cgaaaagaaaacaguucagcacuaagucacuuugucuauauggcaaaugu
gagaugcaguguauggagcgucaauauucuaguaugagaaauuaacgauu
uaaguccuucuuaaaugaggccauuuacccauagagggugccaggcccgu
auaacguuaaugauuacuagaugauguuuccaaagagucguguugcuuga
uagugcagcacuaagugggugguaaacuccaucuaaaacuaaauauaacc
augagaccgauaguaaacaaguaccgugagggaaaguugaaaagaacucu
gaauagagaguuaaacaguacgugaaacugcuuagagguuaagcccgaug
aaccugaauauccguuauggaaaauucaucauuaaaauuguaauauuuaa
auaauauuaugagaauagugugcauuuuuuccauauaaggacauuguaau
cuauuagcauauaccaaauuuaucauaaaauauaacuuauaguuuauucc
aauuaaauugcuugcauuuuaacacagaauaaauguuauuaauuugauaa
agugcugauagauuuauaugauuacagugcguuaauuuuucggaauuaua
uaauggcauaauuaucauugauuuuuguguuuauuauaugcacuuguaug
auuaacaaugcgaaagauucaggauaccuucgggacccgucuugaaacac
ggaccaaggagucuaacauaugugcaaguuauugggauauaaaccuaaua
gcguaauuaacuugacuaauaaugggauuaguuuuuuagcuauuuauagc
uaauuaacacaaucccggggcguucuauauaguuauguauaauguauauu
uauauuauuuaugccucuaacuggaacguaccuugagcauauaugcugug
acccgaaagauggugaacuauacuugaucagguugaagucaggggaaacc
cugauggaagaccgaaacaguucugacgugcaaaucgauugucagaauug
aguauaggggcgaaagaccaaucgaaccaucuaguagcugguuccuuccg
aaguuucccucaggauagcuggugcauauauuauauaaaauaaucuuauc
ugguaaagcgaaugauuagaggccuuagggucgaaacgaucuuaaccuau
ucucaaacuuuaaauggguaagaaccuuaacuuucuugauaugaagauca
agguuaugauauaaaugucccagugggccacuuuugguaagcagaacugg
cgcugugggaugaaccaaacguaauguuacgugcccaaauuaacaacuca
ugcagauaccaugaaaggcguugguugcuuaaaacagcaggacggugauc
auggaagucgaaauccgcuaaggaguguguaacaacucaccugccgaagc
aacuagcccuuaaaauggauggcgcuuaaguuguauaccuauacauuacc
gcuaaaguagaugauuuauauuacuugugauauaaauuuugaaacuuuag
ugaguaggaagguacaaugguaugcguagaaguguuuggcguaagccugc
auggagcugccauugguacagaucuugguggauaguagcaaauaaucgaa
ugagagccuuggaggacugaaguggagaaggguuucgugugaacaguggu
ugaucacgaguuagucgguccuaaguucaaggcgaaagcgaaaauuuuca
aguaaaacauaauuuugaacgaaagggaauacgguuccaauuccguaacc
uguugaguauccguuuguuauuaaauaugggccucgugcucauccuggca
acaggaacgaccauaaagaagccgucgagagauaucggaagaguuuucuu
uucuguuuuauagccguacuaccauggaagucuuucgcagagagauaugg
uagaugggcuagaagagcaugacauauacuguugugucgauauuuucucc
ucggaccuugaaaauuuaugguggggacacgcaaacuucucaacaggccg
uaccaauauccgcagcuggucuccaaggugaagagucucuagucgauaga
auaauguagguaagggaagucggcaaauuagauccguaacuucgggauaa
ggauuggcucugaagauugagauagucggccuugauugggaaacuggaac
uuucuugcuaaauuauaacgauuaucaauuaacaaucaauucagaacugg
cacggacuuggggaauccgacugucuaauuaaaacaaagcauugugaugg
cccuagcggguguugacacaaugugauuucugcccagugcucugaauguc
aaagugaagaaauucaaguaagcgcgggucaacggcgggaguaacuauga
cucucuuaagguagccaaaugccucgucaucuaauuagugacgcgcauga
auggauuaacgagauuccuacugucccuaucuacuaucuagcgaaaccac
agccaagggaacgggcuuggaauaauuagcggggaaagaagacccuuuug
agcuugacucuaaucuggcaguguaaggagacauaagagguguagaauaa
gugggagauauuagaccucgguuugguaucgucaaugaaauaccacuacu
cuuauuguuuccuuacuuacuugauuaaauggaacguguaucauuuccua
gauuggguuuugaugcaagcuucuugaucaaaguaucacgaguuuguuau
auaaucgcaaacaaauuugguauaacuccaauuacucagguaugauccaa
uucaaggacauugccagguagggaguuugacuggggcgguacaucucuca
aauaauaacggaggugucccaaggccagcucagugcggacagaaaccaca
cauagagcaaaagggcaaaugcugacuugaucucgguguucaguacacac
agggacagcaaaagcucggccuaucgauccuuuugguuuaaagaguuuuu
aacaagaggugucagaaaaguuaccauagggauaacuggcuuguggcggc
caagcguucauagcgacgucgcuuuuugauccuucgaugucggcucuucc
uaucauugugaagcaaaauucaccaagcguuggauuguucacccaugcaa
gggaacgugagcuggguuuagaccgucgugagacagguuaguuuuacccu
acuaaugacaaaacguuguugcgacagcauuccugcguaguacgagagga
acccgcagguacggaccaauggcacaauacuuguucgagcgaacaguggu
augacgcuacguccguuggauuaugccugaacgccucuaaggucguaucc
gugcuggacugcaaugauaaauaaggggcaauuugcauuguauggcuucu
aaaccauuuaaaguuuauaauuuacuuuauaaacgacaauggaugugaug
ccaauguaauuuguaacauaguaaauugggaggaucuucgaucaccugau
gccgcgcuaguuacauauaaaagcauuauuuaauacaaugacaaagccua
gaaucaauuguaaacgacuuuuguaacaggcaagguguuguaagugguug
agcagcugccauacugcgauccacugaagcuuauccuuugcuugaugauu
cga
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Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6xu8 Ribosome heterogeneity in Drosophila melanogaster gonads through paralog-switching.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
G18 K19 K34 K35 R38 M42 R44 T50 W51 R56 K61
Binding residue
(residue number reindexed from 1)
G17 K18 K33 K34 R37 M41 R43 T49 W50 R55 K60
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:6xu8, PDBe:6xu8, PDBj:6xu8
PDBsum6xu8
PubMed34283226
UniProtQ9VJY6|RL24_DROME Large ribosomal subunit protein eL24 (Gene Name=RpL24)

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