Structure of PDB 6hiv Chain CU Binding Site BS01

Receptor Information
>6hiv Chain CU (length=184) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGYMMYHRKAMGTMKYSKWKGAHGGISHFYGRTPMVEEVRPNEPITLVDR
RIMHYVHHSRLRHFQLFRSYQEKSNSTECKLREGEMLRRRWHRRLQKSFI
AFMQFKTMKVLEDQARLVNTYGQAAVNAALGDPWNATDNVARERKSAAVR
RQVRALPMVNVVPKHVATMKQIHNDRFNYRWRVN
Ligand information
>6hiv Chain CA (length=621) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuua
ucauuuuauaaagguuuauuuuugaaagauuuuuuguauaaaauuuuagg
aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaaguguug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
agguauaugcaaauauaaaauuauaguaauuauaaauuauauuauauuau
auuuauucauauaauuaauaggauaauauuuguaguuuuugauaccauga
uaaggauuauaaauugaaaguguuaauaucauaaucaaaauuuauuauuu
auauuaaauauguauguguagauaaaauaagaaauuaaaaagguauuguu
gcccaccaauuuuuauaauaaaaauaacgugcaguaauuaauauauuuau
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....................<<<.......<<<<..............<.
..>..........................................<<...
.<<...<<<.......>>>..>>.......>>........<<....>>..
..................................................
.................<<<.(...<<<<<.....<<..).>>.......
>>>>>>>>.......>>>>............<..................
.<.......>.....................>............<<<...
.>>>................<......>..>>>..<<.............
.<<<<<............................................
..................................................
.....................>>>>>..................>>....
<<.<<<..<<<<<<.....>>>>>>...>>>..>>....<<<<<<<<<..
..>>>>>>>>>..........
Receptor-Ligand Complex Structure
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PDB6hiv Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution7.8 Å
Binding residue
(original residue number in PDB)
G10 G11 Y12 M13 M14 H16 K18 A19 T22 M23 K24 Y25 S26 K27 W28 K29 H37 Y64 H67 S68 R69 Y79 S85 K89 R97 R98 H101 R102 M178 K179 R189 W190 R191 V192
Binding residue
(residue number reindexed from 1)
G1 G2 Y3 M4 M5 H7 K9 A10 T13 M14 K15 Y16 S17 K18 W19 K20 H28 Y55 H58 S59 R60 Y70 S76 K80 R88 R89 H92 R93 M169 K170 R180 W181 R182 V183
Enzymatic activity
Enzyme Commision number ?
Gene Ontology

View graph for
Cellular Component
External links
PDB RCSB:6hiv, PDBe:6hiv, PDBj:6hiv
PDBsum6hiv
PubMed30213880
UniProtQ580M9

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