Structure of PDB 4v7e Chain CU Binding Site BS01

Receptor Information
>4v7e Chain CU (length=108) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSV
TVTRDKTKVTVTSDGAFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNV
YELRYFNI
Ligand information
>4v7e Chain Aa (length=3391) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcgcgaccccaggucaggcgggacuaccgcugaguuuaagcauauaaaua
agcggaggagaagaaacuuacaaggauuccccuaguaacggcgagcgaac
cgggagcagcccagcuugagaaucgggcggcugugccguccgaauuguag
ucuggagaggcguccucagcgacggaccgggcccaaguccccuggaaagg
ggcgccugggagggugagagccccguccggcccggacccugucgccccac
gaggcgccgucaacgagucggguuguuugggaaugcagcccaaaucgggc
gguagacuccguccaaggcuaaauacaggcgagagaccgauagcgaacaa
guaccgcgagggaaagaugaaaaggacuuugaaaagagagucaaagagug
cuugaaauugccgggagggaagcggaugggggccggcgaugcgccccggc
cguaugcggaacggcucuugcugguccgccgcucggcucggggcguggac
uguugucggccgcgccggcggccaaagcccgggggcuccgcgcccccggc
agccgucgucggcacggccgguacccgcgcgccgaaaggcgugccccucg
gggcacugcgcugcaacgcccugcgggcuccccauccgacccgucuugaa
acacggaccaaggagucugacaugcgugcgagucgacggguucugaaacc
ugggaugcgcaaggaagcugacgagcgggaggcccucacgggccgcaccg
cuggccgacccugaucuucugugaaggguucgaguuggagcacgccuguc
gggacccgaaagauggugaacuaugccugagcggggcgaagccagaggaa
acucugguggaggcucgaagcgauacugacgugcaaaucguucgucugac
uuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucccu
ccgaaguuucccucaggauagcuggagcccauuacgaguucuaucaggua
aagccaaugauuagaggcauuggggacgcaacguccucgaccuauucuca
aacuuuaaauagguaggauggcgcggcugcuucggugagccgugccaugg
aaucgggugcuccaagugggccauuuuugguaagcagaacuggcgaugcg
ggaugaaccggaagccggguuacggugcccaacugcgcgcuaaccuagaa
cccacaaaggguguuggucgauuaagacagcaggacgguggucauggaag
ucgaaauccgcuaaggaguguguaacaacucaccugccgaaucaacuagc
cccgaaaauggauggcgcugaagcgcgcgacccacacccggccaucuggg
cgagugccaugccccgaugaguaggagggcgcggcggccgaugcaaaacc
cggggcgcgagcccgggcggagcggccgucggugcagaucuuggugguag
uagcaaauauucaaaugagaacuuugaaggccgaagaggagaaagguucc
augugaacggcacuugcacauggguaagccgauccuaagggaagggguaa
ccccggcagauagcgcgaucacgcgcauccccgaaagggaaucggguuaa
gauuucccgagccgggauguggcgguugacggcgacguuaggaaguccgg
agacgccggcgggggccucgggaagaguuaucuuuucugcuuaacggccu
gccaacccuggaaacgguucagccggagguaggguccaguggccggaaga
gcacacgucgcgcgguguccggugcgcccccggcggcccaugaaaauccg
gaggaccgaguaccguucacgcccggucguacucauaaccgcaucagguc
uccaaggugaacagccucuggccaauggaacaauguaggcaagggaaguc
ggcaaaacggauccguaacuucgggaaaaggauuggcucugaggacuggg
cucgggggucccggccccgaacccgucggcugucggcggauugcucgagc
ugcucacgcggcgagagcgggucgccgcgugccggccgggggacggaccg
ggaaucgccccuucgggggcuuuccccgagcaugaaacagucgacucaga
acugguacggacaaggggaauccgacuguuuaauuaaaacaaagcauugc
gaugguccucgcggaugcugacgcaaugugugauuucugcccagugcucu
gaaugucaaagugaagaaauucaaccaagcgcggguaaacggcgggagua
acuaugacucucuuaagguagccaaaugccucgucaucuaauuagugacg
cgcaugaaugaauggauuaacgagauucccacugucccugucuacuaucc
agcgaaaccacagccaagggaacgggcuuggcggaaucagcggggaaaga
agacccuguugagcuugacucuaguccgacuuugugaaaugacuugagag
guguaggauaagugggagcccucacgggcgcaagugaaauaccacuacuu
uuaacguuauuuuacuuauuccgugggucggaagcggggcaugccccucc
uuuuggcuccaaggcccggucuuaccgggccgauccgggcggaagacauu
gucagguggggaguuuggcuggggcggccaaucuguuaaaagauaacgca
gguguccuaagaugagcucaacgagaacagaaaucucguguggaacaaaa
ggguaaaagcucguuugauucugauuuccaguacgaauacgaaccgugaa
agcguggccuaucgauccuuuagacuucggaguuugaagcuagagguguc
agaaaaguuaccacagggauuacuggcuuguggcagccaagcguucauag
cgacguugcuuuuugauccuucgaugucggcucuuccuaucauugcgaag
cagaauucaccaaguguuggauuguucacccaccaauagggaacgugagc
uggguuuagaccgucgugagacagguuaguuuuacccuacugaugacagu
gucgcgauaguaauucaaccuaguacgagaggaaccguugauucacacaa
uuggucaucgcgcuugguugaaaagccaguggcgcgaagcuaccgugugc
cggauuaugacugaacgccucuaagucagaauccaagcuagcaugcgacg
ccugcgcccgccgcccgccccgacccacguuaggggcgcuugcgccccca
agggcccgugccauuggcuaagccgguccggccgaagugccgcggucggc
cgccucgaagcucccuucccaacgggcggugggcugaauccuuugcagac
gacuuaaauacgcgacggggcauuguaaguggcagaguggccuugcugcc
acgauccacugagauccaguccccgcgucgcacggauucgu
..........................<<<<<.....<......>......
>>>>>...........<<....>>..<<<<<.......<.....>.....
.>>>>>..<<<...........<<<<<<<<<...>>>>>>>>>.......
......<<<<<<.<<<<.<<<<<<<.<<<<<<<.....<<<<......>>
>>.((......<<<.....))>>>....>>>>>>>...>>>>>>>.....
>>>>>>>>.>>........<<<<<<<........>>>>>>>.....<<<<
<..((((((>>>>>..>>>...............................
...<<....>>...............<<<<....>>>>............
........................<<<<<<<<<<.<<...<<<<<<<<<<
<<..<<<<<<.<<<<....>>>>.>>>>.>>..>>>>.>>>>>>>>....
<<<<<<<<<<<<.<<<<<<<<.......<<<<<<<<.....>>>>>>>>.
.....>>>>>>>>.>>>>>>>.....<<<<<<<....>>><<<<<<....
>>>>>>.>>>>..>>>>>....>>.>>>.>>>>>>>....<<<<......
..>>>><<<<<<.....<<<<<.<<<<<<..<<<...<<.<.....>.>>
...>>>...<......>......<<<<<..<<<<<....>>>>>...>>>
>><<<<<<<<<....<....>....>>>.>>>.>>>...>>>>>>.>>>>
>...<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<...
.>>>>>>>.....>>>...<<<<.<<.<<........>>>>>>>>....>
>>>>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<
<<....<.<<<....>>>.><<<<<<<<.<....<<<.<<<<<<<.....
<<<....<<<....<<<....<<<<<<.....>>>>>>..>>>....>>>
..>>.>.....>>>>>...<<<<<<<<<.........>>>>>>>>>....
>>>>>.>.>>>>>>.>>..<<<<.<<<<<.....>>>>>.>>>>....<<
<......>>>...<<<<<<<...<<<(((.....<<<<<<......<<..
........<<<.<<<<<<.<<<.......<<<<<.<<.....<.......
..>.....>>.........<<......>>...>>>>>...>>>.>>>>>>
>>>..........))).>>...>>>>>>.>>>...>>>>>>><<<<.<<<
<.........>>>>.>>>>....>>>>>><<<<<<<<<<<........<<
<.<<<<....>>>>>>>.....>>>>>>>>>.>>.....>>>>>><<...
..<<.....<<<<<<.......>>>>>><<<<.....<<<<<.<<...<<
<<<<...<<.....>>.>>>>>>....((<<<<<<...<<<...<<<...
.>>>........<<<<<....>>>>>...>>>....>>...<<<<<....
....>>>.>>))<<<<.<<<<..<....<<<....>>>.......<<<<<
<...<<<<.<<<<<<<.<<<<<.<<<<...[[..>>>>.><...<<<<<.
....<<<<<<.....<<.....>>.....>>>>>>.....>>>>>....>
<<<<..........>>>>>>>>...>>>>>>>.>>>>.........>>>>
>>..........>....>>>>>>>>>>>>..>>.....<<......>>>>
>>>.<<<<.....>>>>..>>>>..<<<<.....<<<<<<<.<<......
.........<<<<<....<....>.....>>>>><<.<<<<<<<<<<<.<
<<<<<<<.<<<<<<..<<<..<<<<<<<<<<<.<<<<<<.<<<<<<..<<
<<<....>>>>>..>>>>>>.>>>>>>>>.>>>>>>..>>>..>>>.>>>
>>>...<<<<......>>>>...>>>>>>>>......>>>>>..>>>>>>
.>>............<<<<<<<<<..<<<.........>>>..<<<..<<
....<<<<....>>>>......>>....>>>...<<<.<<<..<<<<<<.
<...<<.....<<<<....>>>>.....>>.>>>>>..>>>>><<<<<<.
......>>>>>>........<...........<<<<<.......>>>>>.
....>....>>>........>>.>>>>>>>.....>>.>>>>>>>..>>>
>>>....>>....<<<<<........>>>>>....<<<<<..<<<.<<..
....<<<<.<<<<<<..<<<<<.<<<.<<<...<<<<<<<<<<<<<<<<<
...........<<<<..<<<<....>>>>............>>>>..>>>
>>>>.>>>>>>>>>>...<<<<<.....<<<<...<<<..........>>
>................<<<<<....>>>>>..>>>>..>>>>>......
>>>.>>>..>>>>>...<<<.....>>>..<<<<<<...........>>>
>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<...(
((>>....>>>>>>>...<<<.<<<<<.......>>>>.>>>>.<<<...
.>>>.>>)))......<<<<<<<.<<<<.))))))>>>>>>>>>>>....
.....>>>>..>>>>>>.......<<.<.<.<<<<<<...<<.......>
>...>>>>>>...>>.>.>.......<<<<<.<<<<<<..<<<.<.<<<.
.....>>>.>...>>>.<<<.<.....>.>>>.....>>>>>..>...>>
>.>>....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>....<<
<<<<<..<<<<.<.<<<<<.................>>>>>.><<<<<..
.<<<<....<<<<<<<<<.]]...>>>>..>>>>>...>>>>..>>>>>.
.<<<...<<<<<...........>>>>>...>>>..>>>>....>>>>>>
>....<<<<<<<<<<<<......<<<......<<<<..<....>.>>>>.
.>>>...........<<<...<<<<<<.<<<<......>>>>.>.>>>>>
.>>>..................>>>>>>>>>>>>.<<<<<.<........
.....>.........<<<<<.<<<....<<<<....<<<<<......>>>
>>...>>>>...>>>....>>>>.>.........>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7e Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Resolution5.5 Å
Binding residue
(original residue number in PDB)
K29 K50 V51 A56 L59 A79 F80 K82 R83 Y84 K86 Y87 L88 K90 K91 K94 K95 V104 I105 A106 N108 K109 R111 Y114
Binding residue
(residue number reindexed from 1)
K16 K37 V38 A43 L46 A66 F67 K69 R70 Y71 K73 Y74 L75 K77 K78 K81 K82 V91 I92 A93 N95 K96 R98 Y101
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Mon Mar 10 09:50:40 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v7e', asym_id = 'CU', bs = 'BS01', title = 'Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v7e', asym_id='CU', bs='BS01', title='Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4v7e', asym_id = 'CU'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='4v7e', asym_id='CU')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>