Structure of PDB 4v7r Chain CR Binding Site BS01

Receptor Information
>4v7r Chain CR (length=47) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VTLAKVIKVLGRTGSRGGVTQVRVEFLEDTSRTIVRNVKGPVRENDI
Ligand information
>4v7r Chain C1 (length=1789) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccgguccgauuuuuuuuuccaacggggccuuuccuucuggcuaaccuu
gaguccuuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuag
aguguucaaagcaggcguauugcucgaauauauuagcauggaauaauaga
auaggacguuugguucuauuuuguugguuucuaggaccaucguaaugauu
aauagggacggucgggggcaucaguauucaauugucagaggugaaauucu
uggauuuauugaagacuaacuacugcgaaagcauuugccaaggacguuuu
cauuaaucaagaacgaaaguuaggggaucgaagaugaucagauaccgucg
uagucuuaaccauaaacuaugccgacuagggaucgggugguguuuuuuua
augacccacucggcaccuuacgagaaaucaaagucuuuggguucuggggg
gaguauggucgcaaggcugaaacuuaaaggaauugacggaagggcaccac
caggaguggagccugcggcuuaauuugacucaacacggggaaacucacca
gguccagacacaauaaggauugacagauugagagcucuuucuugauuuug
ugggugguggugcauggccguucuuaguugguggagugauuugucugcuu
aauugcgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcau
uugcugguuauccacuucuuagagggacuaucgguuucaagccgauggaa
guuugaggcaauaacaggucugugaugcccuuagacguucugggccgcac
gcgcgcuacacugacggagccagcgagucuaaccuuggccgagaggucuu
gguaaucuugugaaacuccgucgugcuggggauagagcauuguaauuauu
gcucuucaacgaggaauuccuaguaagcgcaagucaucagcuugcguuga
uuacgucccugcccuuuguacacaccgcccgucgcuaguaccgauugaau
ggcuuagugaggccucaggaucugcuuagagaagggggcaacuccaucuc
agagcggagaauuuggacaaacuuggucauuuagaggaacuaaaagucgu
aacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...{{{{>>>>>{{{...[[[[[................[[[
.[[[..<<...<.<.....<<..........>>..>.>>>......{{..
......[[[..{{..{{....[[[..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....((((((......<<<<<<<<<<<<..>>>>.............
.))))))..........<<<..<<<.....>>>.>>>.....]]]...}}
}}..]]].<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<<<<<<....>>>>...>>>>.}}.<<.<<<.......
...>>>.>>.<.<<....>>.>...]]]]]].........<<<....<<<
.....>>>..>>>...............<<<<<<<.<<..<....>..>.
>>>>.>>>>......<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..]]]]].
.}}}.........[[[{{.......{{...[[[.{{....<<<<<<.<<<
.<..................>.>>>.>>>>>>....<<<<<<....<<..
<<<<.......>>>>..>>....>>>>>>...<<<<<.<<.......<<.
..<.......>..<<<.....>>>....>>......>>.>>..>>>....
.....[[[.[...((((.....>>>>>>>>..))))..].]]].....}}
....<<<<<<.<<...<<<<..<<..<<<<<<.....<<<......>>>.
.......>>>>>>..>>......<<<....>>>..>>>>...>>>>>.>>
>...]]]...}}......<<<<<<<...<...<<<<.........>>>>.
..>>>>>>>>..........<<<.<<.<<<<..<<<<<<<.<<<......
..>>>>>>>>>>...>>>>..<<..}}>>...>>.....>>>.]]].<<<
......<<<<....>>>>....>>>..}}}}...<<<.<<<<<<<<..<<
.<<<<<<..<<<.<<<<........<<........>>..........<<<
<<.<....<<<<<........<<.<<<........>>>.>>......>>>
>>...<<.<<<..<<.<<<<<<....<<<.<<<<<....>>>...<<<..
....>>>...>>.>>>....<<<<<.<<<.<<<<....<<<<<<<<<<..
..>>>>>.>>.>>>....>>>>>>>....<<<<<<.....>>>>>>....
...>>>>>....>>>.>>>.....>>>>>>>.....>.>>>>>......>
>>>.>>>.....<<<<<<<......<<.....<<..<<<<....>>>>..
>>....>>.......>>>>>>>......<....<<<<<<..........>
>>>>>....>.....>>>>>>....<<<<<<<<.......>>>>>>>>..
....>>...>>>>>>>>>>.>.....<..<<.<..<<<<.<<....<<<<
<<<<.<<<..<.<....<......<<........................
.....>>.....>..>.>..>>>.>>>>>>>>...>>.>>>>...>.>>.
..>.....<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4v7r Crystal structure of the eukaryotic ribosome.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		L33 I53
Binding residue
(residue number reindexed from 1)		L27 I47
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000054 ribosomal subunit export from nucleus
GO:0006412 translation
GO:0030490 maturation of SSU-rRNA
GO:1900153 positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v7r, PDBe:4v7r, PDBj:4v7r
PDBsum4v7r
PubMed21109664
UniProtQ3E7X9|RS28A_YEAST Small ribosomal subunit protein eS28A (Gene Name=RPS28A)

[Back to BioLiP]