Structure of PDB 6hiy Chain CO Binding Site BS01

Receptor Information
>6hiy Chain CO (length=361) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EHPAIWLWYPWRMNPEPPTPHMPQRRALKNVHGAVFNDLTPVQKKRQEQM
LYGVNIPETRQMKFEEQHPLLAGALRKLEGQPKGFPFWYRKYPTRRHAYE
YRFSIPVEMLDGYNDDVKKALSKGMMSIQEKQFAQEAMYMERYAEHDFDT
TSPAVLAVKRALKCRVLRNHLLTNPHNNIIKTVLANTERKLNHALRRLRK
VDFKKYWEIIRDHDVQDILQPPNLVTYRQGSYWKYDWNAGLAISTNLADV
MDPRGLNGCVETGRSRSEVARDLGLSYTRPLHENEKKQLSHQAVYYERLA
KFKMEQPEAARAMERERFVRKFSGMFVKMDIRSGAPDFPSTYRRLLGTKV
VRWASKRHGPN
Ligand information
>6hiy Chain CA (length=478) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaaauuauggucaauuguuaguauucauauuaauuuuuuuaaauguuuua
ucauuuuauaaagguuuauuuuugaaagauuuuuuguauaaaauuuuagg
aauaguuaauaauaauuuauaauuuugauuagauuguuuuguuaaugcua
uuagauggguguggaaaaauaaaaaaaauaauuaauauauaucaauaaua
aauuaaauuaaucuauuagucagaaauggaugccagccguugcgguaauu
ucuaugcuuuuaaauauuauacaauuaucauauuaaauuguuaaguguug
auuuaaccaauaaaaauauaaauaauuuuuauuuguuuuuaaacaccauu
agguauaugcaaauauaaaauuauaguaauuauaaauuauauuaaaaagg
uauuguugcccaccaauuuuuauaauaaaaauaacgugcaguaauuaaua
uauuuauaaaaauauauuuuuuuuuuuu
....................<<<.......<<<<..............<.
..>..........................................<<...
.<<...<<<.......>>>..>>.......>>........<<....>>..
..................................................
.................<<<.(...<<<<<.....<<..).>>.......
>>>>>>>>.......>>>>............<..................
.<.......>.....................>............<<<...
.>>>................<......>..>>>..<<.............
.>>....<<.<<<..<<<<<<.....>>>>>>...>>>..>>....<<<<
<<<<<....>>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6hiy Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Resolution3.27 Å
Binding residue
(original residue number in PDB)
W79 R80 M81 N82 P85 H89 Q92 R93 R94 K97 Q197 K231 H238 N242 N245 N246 I247 I248 V251 N254 R257 H261 N291 V293 R296 S299 K302 Y303 N352 K355 Q356 H359 Q360 Y363 R385 R388 M393 F394 V395 K396 I399 R400 P404 S408 T409 Y410 R411 R412 L413 K417 R420 W421 A422 S423 K424 R425 H426 G427 P428 N429
Binding residue
(residue number reindexed from 1)
W11 R12 M13 N14 P17 H21 Q24 R25 R26 K29 Q129 K163 H170 N174 N177 N178 I179 I180 V183 N186 R189 H193 N223 V225 R228 S231 K234 Y235 N284 K287 Q288 H291 Q292 Y295 R317 R320 M325 F326 V327 K328 I331 R332 P336 S340 T341 Y342 R343 R344 L345 K349 R352 W353 A354 S355 K356 R357 H358 G359 P360 N361
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005739 mitochondrion
GO:0005763 mitochondrial small ribosomal subunit

View graph for
Cellular Component
External links
PDB RCSB:6hiy, PDBe:6hiy, PDBj:6hiy
PDBsum6hiy
PubMed30213880
UniProtQ4GZ99

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