Structure of PDB 4v8a Chain CL Binding Site BS01 |
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>4v8a Chain CA (length=1498)
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guuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaag acaugcaagucgugcgggccgcgggcccguggucagcggcggacggguga guaacgcgugggugaccuacccggaagagggggacaacccggggaaacuc gggcuaaucccccauguggacccgccccuugggguguguccaaagggcuu ugcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaau ggcccaccaaggcgacgacggguagccggucugagaggauggccggccac aggggcacugagacacgggccccacuccuacgggaggcagcaguuaggaa ucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaaga agcccuucgggguguaaacuccugaacccgggacgaaacccccgacgagg ggacugacgguaccgggguaauagcgccggccaacuccgugccagcagcc gcgguaauacggagggcgcgagcguuacccggauucacugggcguaaagg gcguguaggcggccuggggcgucccaugugaaagaccacggcucaaccgu gggggagcgugggauacgcucaggcuagacggugggagagggugguggaa uucccggaguagcggugaaaugcgcagauaccgggaggaacgccgauggc gaaggcagccaccugguccacccgugacgcugaggcgcgaaagcgugggg agcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcgc uaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccgc cuggggaguacggccgcaaggcugaaacucaaaggaauugacgggggccc gcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccuu accaggccuugacaugcuagggaacccgggugaaagccuggggugccccg cgaggggagcccuagcacaggugcugcauggccgucgucagcucgugccg ugagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguug ccagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggagg aaggaggggacgacgucuggucagcauggcccuuacggccugggcgacac acgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagcu aaucgcaaaaaggugggcccaguucggauuggggucugcaacccgacccc augaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaaua cguucccgggccuuguacacaccgcccgucacgccaugggagcgggcucu acccgaagucgccgggagccuacgggcaggcgccgaggguagggcccgug acuggggcgaagucguaacaagguagcuguaccggaaggugcggcugg |
......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..< <<.<<<..<<<..<<.<<<<<<<<..>>>>>>>>.>>>>>......<<.. .....<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......>> >>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<.. .>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<..... ..>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>> .<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>.... ....<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<..... .<<<<....>>>>.....>>>>....<<<<<......<.<<<<.....>> >>..>.......>>>>>......<<<<<(((...<<<<<.....<<.))) >>.......>>>>>>>>>>..>>>>>>>>>..........<<<((..... <<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>> >>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<.... <<<<<<<.<..<<<......>>>.....>.>>>>>>>...........<< ....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<.. .<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<< ..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.>> >.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<< <.<<.<<<<<<..<<<<<<<<<<......<<........>>......... .<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>.....<.. ....>....>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<. ...>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<... <...<<<.....>>>>.....>>>>>>>.....<<<<<....>>>>>... .....>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.> >>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>. ...>>>.....>>>>>>>.........<.<<<<<<<........>>>>>> >>.........>>>>>>....<<<<<<<..........>>>>>>>..... .>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<<< <<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>>. .>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>.. |
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PDB | 4v8a The antibiotic thermorubin inhibits protein synthesis by binding to inter-subunit bridge b2a of the ribosome. |
Resolution | 3.2 Å |
Binding residue (original residue number in PDB) | P5 T6 N8 Q9 R12 R15 E16 A30 P31 F32 R33 R34 K46 K47 N49 S50 R53 T61 Y69 P71 G72 E73 L84 R86 G87 V90 D92 R97 V104 R113 K114 K115 S116 R117 S118 K119 T122 K123 K124 |
Binding residue (residue number reindexed from 1) | P1 T2 N4 Q5 R8 R11 E12 A26 P27 F28 R29 R30 K42 K43 N45 S46 R49 T57 Y65 P67 G68 E69 L80 R82 G83 V86 D88 R93 V100 R109 K110 K111 S112 R113 S114 K115 T118 K119 K120 |
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Enzyme Commision number |
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