Structure of PDB 4v7l Chain CL Binding Site BS01

Receptor Information
>4v7l Chain CL (length=124) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRK
VAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGV
YDAAGVKDRKKSRSKYGTKKPKEA
Ligand information
>4v7l Chain CA (length=1495) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcgggccgcggccguggucagcggcggacgggugaguaa
cgcgugggugaccuacccggaagagggggacaacccggggaaacucgggc
uaaucccccauguggacccgccccuugggguguguccaaagggcuuugcc
cgcuuccggaugggcccgcgucccaucagcuaguuggugggguaauggcc
caccaaggcgacgacggguagccggucugagaggauggccggccacaggg
gcacugagacacgggccccacuccuacgggaggcagcaguuaggaaucuu
ccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaagaagcc
cuucgggguguaaacuccugaacccgggacgaaacccccgacgaggggac
ugacgguaccgggguaauagcgccggccaacuccgugccagcagccgcgg
uaauacggagggcgcgagcguuacccggauucacugggcguaaagggcgu
guaggcggccuggggcgucccaugugaaagaccacggcucaaccgugggg
gagcgugggauacgcucaggcuagacggugggagagggugguggaauucc
cggaguagcggugaaaugcgcagauaccgggaggaacgccgauggcgaag
gcagccaccugguccacccgugacgcugaggcgcgaaagcguggggagca
aaccggauuagauacccggguaguccacgcccuaaacgaugcgcgcuagg
ucucugggucuccugggggccgaagcuaacgcguuaagcgcgccgccugg
ggaguacggccgcaaggcugaaacucaaaggaauugacgggggcccgcac
aagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccuuacca
ggccuugacaugcuagggaacccgggugaaagccuggggugccccgcgag
gggagcccuagcacaggugcugcauggccgucgucagcucgugccgugag
guguuggguuaagucccgcaacgagcgcaacccccgccguuaguugccag
cgguucggccgggcacucuaacgggacugcccgcgaaagcgggaggaagg
aggggacgacgucuggucagcauggcccuuacggccugggcgacacacgu
gcuacaaugcccacuacaaagcgaugccacccggcaacggggagcuaauc
gcaaaaaggugggcccaguucggauuggggucugcaacccgaccccauga
agccggaaucgcuaguaaucgcggaucagccaugccgcggugaauacguu
cccgggccuuguacacaccgcccgucacgccaugggagcgggcucuaccc
gaagucgccgggagccuacgggcaggcgccgaggguagggcccgugacug
gggcgaagucguaacaagguagcuguaccggaaggugcggcugga
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<<
.<<<..<<<..<<.<<<<<<<..>>>>>>>.>>>>>......<<......
.<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......>>>>>.
....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<...>>>
>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.......>>
>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>.<<<
<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>........
<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<......<<<
<....>>>>.....>>>>....<<<<<........<<<<.....>>>>..
........>>>>>......<<<<<(((...<<<<<.....<<.)))>>..
.....>>>>>>>>>>..>>>>>>>>>..........<<<((.....<<<<
...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>>>..
..>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<.<..<<<<
<<<.<..<<<......>>>.....>.>>>>>>>...>.......<<....
>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<...<<.
..<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<..<<
<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.>>>.<<
<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<.<<
.<<<<<<..<<<<<<<<<<......<<........>>..........<<<
<<<<......<<<<<.<<..<<<<<<<....>>>>>>>....<<.....>
>....>>.>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<....>
>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<...<...
<<<.....>>>>.....>>>>>>>.....<<<<<....>>>>>.......
.>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>>>>>
>>>.....<<<<<<<.....<<<..<...<<<<....>>>>...>....>
>>.....>>>>>>>......<..<.<<<<<<<........>>>>>>>>..
.>.....>>>>>>....<<<<<<<..........>>>>>>>......>>.
..>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<<<<<<<
...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>>..>>>
.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>...
Receptor-Ligand Complex Structure
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PDB4v7l The structures of the anti-tuberculosis antibiotics viomycin and capreomycin bound to the 70S ribosome.
Resolution3.0 Å
Binding residue
(original residue number in PDB)
P2 T3 N5 Q6 R9 R12 E13 K17 K25 A27 P28 F29 R30 R31 K43 K44 P45 N46 S47 R50 K51 K54 P68 G69 E70 R83 G84 K88 D89 P91 R94 R110 K111 K112 S113 R114 S115 K116 T119 K120 K121
Binding residue
(residue number reindexed from 1)
P1 T2 N4 Q5 R8 R11 E12 K16 K24 A26 P27 F28 R29 R30 K42 K43 P44 N45 S46 R49 K50 K53 P67 G68 E69 R82 G83 K87 D88 P90 R93 R109 K110 K111 S112 R113 S114 K115 T118 K119 K120
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:4v7l, PDBe:4v7l, PDBj:4v7l
PDBsum4v7l
PubMed20154709
UniProtQ5SHN3|RS12_THET8 Small ribosomal subunit protein uS12 (Gene Name=rpsL)

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