Structure of PDB 4v4g Chain CL Binding Site BS01

Receptor Information
>4v4g Chain CL (length=124) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRK
VAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGV
YDAAGVKDRKKSRSKYGTKKPKEA
Ligand information
>4v4g Chain CA (length=1526) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac
augcaagucgugcggauacgcgcggccccuuggggccgugcgucagcggc
ggacgggugaguaacgcgugggugaccuacccggaagagggggacaaccc
ggggaaacucgggcuaaucccccauguggacgcaaguccaaagggggaag
ccuucgggucccccgcuuccggaugggcccgcgucccaucagcuaguugg
ugggguaauggcccaccaaggcgacgacggguagccggucugagaggaug
gccggccacaggggcacugagacacgggccccacuccuacgggaggcagc
aguuaggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuu
ggaggaagaagcccuucgggguguaaacuccugaacccgggacgaaacca
gggccacucauacuggcucugacugacgguaccgggguaauagcgccggc
caacuccgugccagcagccgcgguaauacggagggcgcgagcguuacccg
gauucacugggcguaaagggcguguaggcggccuggggcgucccauguga
aagaccacggcucaaccgugggggagcgugggauacgcucaggcuagacg
gugggagagggugguggaauucccggaguagcggugaaaugcgcagauac
cgggaggaacgccgauggcgaaggcagccaccugguccacccgugacgcu
gaggcgcgaaagcguggggagcaaaccggauuagauacccggguagucca
cgcccuaaacgaugcgcgcuaggucucuggcggcucaaccgcugggggcc
gaagcuaacgcguuaagcgcgccgccuggggaguacggccgcaaggcuga
aacucaaaggaauugacgggggcccgcacaagcgguggagcaugugguuu
aauucgaagcaacgcgaagaaccuuaccaggccuugacaugcuagggaac
ccgggugaaagccuggggugccuucgggagcccuagcacaggugcugcau
ggccgucgucagcucgugccgugagguguuggguuaagucccgcaacgag
cgcaacccccgccguuaguugccagcgguucggccgggcacucuaacggg
acugcccgcgaaagcgggaggaaggaggggacgacgucuggucagcaugg
cccuuacggccugggcgacacacgugcuacaaugcccacuacaaagcgau
gccacccggcaacggggagcuaaucgcaaaaaggugggcccaguucggau
uggggucugcaacccgaccccaugaagccggaaucgcuaguaaucgcgga
ucagccaugccgcggugaauacguucccgggccuuguacacaccgcccgu
cacgccaugggagcgggcucuacccgaagucgccggguaaccuacgggaa
gaggcgccgaggguagggcccgugacuggggcgaagucguaacaagguag
cuguaccggaaggugcggcuggauca
....<<<<....(((..>>>>.<<<<.<<<<<..<<<<<<<......<<<
.<<<..<<<..<<.....<<<<..<<<<....>>>>..>>>>...>>>>>
......<<.......<<<<<<<<..<<...<<...<<....<<....<<<
..........>>>.....>>........<<<....>>>......<<<<..
........>>>.>..>>...>>..>>>>>>>>>><<<....<<<....<<
<<..........>.>>>..>>>......>>>...<<.<<<<....>>>>.
...>>..>>.<<<<<............>>>>>...<<....>>.....>>
>>>>.........<<<....<<<<....>>>>..>>>...>.>>>>>>..
<<<<......<<<......>>>.....>>>>..<<<<<<<.........<
<<<<<<.......>>>>>>>...........>>>>>.>..>.<<<<<(((
...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>.
.........<<.(......<<<<...<<<.<<<<<<<.<<<<.<<<<...
......<<<<.....>>>>.......>>>>.>>>..>>>>>>>>...<<<
<<<<<...<<<<<<<....<<<<<<<....<<<......>>>.......>
>>>>>>...........<<....>>.>>>>>>>..>>>>>.>>>...>>>
...>>>>....<<<<<<...<<...<<<<.........>>>>...>>>>>
>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>>>>>>>>
...<<...)>>.....>>>>>>..>>.<<<......<<<<....>>>>..
..>>>...)))...<<<<.<<<<<<<.<<..<<<<...<<<<<<<<<<..
....<<........>>..........<<<<<<.......<<<<<.<<...
<.<<<<....>>>>.>..............>>.>>>>>.<<..<<<..<<
<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..>>>>>
>.....<<<<.<<<<<.....<...<<<.....>>>>.......>>>>>.
....<<<<<....>>>>>........>>>>.........>>>...>>>>>
>.>>....>>>>>>...>>.>>>>>>>>.....<<<<<<<.....<<<..
<<..<<<<....>>>>..>>....>>>.....>>>>>>>......<....
<<<<<<<........>>>>>>>....>......>>>>.....<<<<<<<.
.........>>>>>>>......>>...>>>>>>>>>>.>........<<.
..<<<<.<<<..<<<<<<<<<.<<....<.<<<<................
..>>>>.>...>>.>>>>>>>>>..>>>.>>>>....>>.........<<
<<.<<<<....>>>>.>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v4g Structural basis for the control of translation initiation during stress.
Resolution11.5 Å
Binding residue
(original residue number in PDB)		T6 I7 N8 R12 K13 E16 K17 R19 K21 K23 G29 P31 F32 K47 P48 N49 S50 A51 L52 R53 E65 Y69 L84 V90 K91 R97 R113 K115 R117 S118 T122 K123
Binding residue
(residue number reindexed from 1)		T2 I3 N4 R8 K9 E12 K13 R15 K17 K19 G25 P27 F28 K43 P44 N45 S46 A47 L48 R49 E61 Y65 L80 V86 K87 R93 R109 K111 R113 S114 T118 K119
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 15:29:36 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v4g', asym_id = 'CL', bs = 'BS01', title = 'Structural basis for the control of translation initiation during stress.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='4v4g', asym_id='CL', bs='BS01', title='Structural basis for the control of translation initiation during stress.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412,0015935', uniprot = '', pdbid = '4v4g', asym_id = 'CL'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015935', uniprot='', pdbid='4v4g', asym_id='CL')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>