Structure of PDB 4v7r Chain CI Binding Site BS01

Receptor Information
>4v7r Chain CI (length=121) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMK
KLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIR
PEMLGHYLGEFSITYTPVRHG
Ligand information
>4v7r Chain C1 (length=1789) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc
augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca
uuaaaucaguuaucguuuauuugauaguuccuuuacuacaugguauaacu
gugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaaga
gauguauuuauuagauaaaaaaucaaugucuucggacucuuugaugauuc
auaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaa
auuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuu
caacggguaacggggaauaaggguucgauuccggagagggagccugagaa
acggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccu
aauucagggagguagugacaauaaauaacgauacagggcccauucggguc
uuguaauuggaaugaguacaauguaaauaccuuaacgaggaacaauugga
gggcaagucuggugccagcagccgcgguaauuccagcuccaauagcguau
auuaaaguuguugcaguuaaaaagcucguaguugaacuuugggcccgguu
ggccgguccgauuuuuuuuuccaacggggccuuuccuucuggcuaaccuu
gaguccuuguggcucuuggcgaaccaggacuuuuacuuugaaaaaauuag
aguguucaaagcaggcguauugcucgaauauauuagcauggaauaauaga
auaggacguuugguucuauuuuguugguuucuaggaccaucguaaugauu
aauagggacggucgggggcaucaguauucaauugucagaggugaaauucu
uggauuuauugaagacuaacuacugcgaaagcauuugccaaggacguuuu
cauuaaucaagaacgaaaguuaggggaucgaagaugaucagauaccgucg
uagucuuaaccauaaacuaugccgacuagggaucgggugguguuuuuuua
augacccacucggcaccuuacgagaaaucaaagucuuuggguucuggggg
gaguauggucgcaaggcugaaacuuaaaggaauugacggaagggcaccac
caggaguggagccugcggcuuaauuugacucaacacggggaaacucacca
gguccagacacaauaaggauugacagauugagagcucuuucuugauuuug
ugggugguggugcauggccguucuuaguugguggagugauuugucugcuu
aauugcgauaacgaacgagaccuuaaccuacuaaauaguggugcuagcau
uugcugguuauccacuucuuagagggacuaucgguuucaagccgauggaa
guuugaggcaauaacaggucugugaugcccuuagacguucugggccgcac
gcgcgcuacacugacggagccagcgagucuaaccuuggccgagaggucuu
gguaaucuugugaaacuccgucgugcuggggauagagcauuguaauuauu
gcucuucaacgaggaauuccuaguaagcgcaagucaucagcuugcguuga
uuacgucccugcccuuuguacacaccgcccgucgcuaguaccgauugaau
ggcuuagugaggccucaggaucugcuuagagaagggggcaacuccaucuc
agagcggagaauuuggacaaacuuggucauuuagaggaacuaaaagucgu
aacaagguuuccguaggugaaccugcggaaggaucauua
...<<<<<...{{{{>>>>>{{{...[[[[[................[[[
.[[[..<<...<.<.....<<..........>>..>.>>>......{{..
......[[[..{{..{{....[[[..................<.....<<
.<<<.....>>>.>>......>.........<<<<<..<<....>>..>>
>>>....((((((......<<<<<<<<<<<<..>>>>.............
.))))))..........<<<..<<<.....>>>.>>>.....]]]...}}
}}..]]].<<<....<<<....<<<<<<<<.......>>>>>>>>>>>..
....>>>...<<<<<<<<....>>>>...>>>>.}}.<<.<<<.......
...>>>.>>.<.<<....>>.>...]]]]]].........<<<....<<<
.....>>>..>>>...............<<<<<<<.<<..<....>..>.
>>>>.>>>>......<<..<...........>..>>.........<<<<<
((......<<<<.....<<..))>>.......>>>>.>>>>>..]]]]].
.}}}.........[[[{{.......{{...[[[.{{....<<<<<<.<<<
.<..................>.>>>.>>>>>>....<<<<<<....<<..
<<<<.......>>>>..>>....>>>>>>...<<<<<.<<.......<<.
..<.......>..<<<.....>>>....>>......>>.>>..>>>....
.....[[[.[...((((.....>>>>>>>>..))))..].]]].....}}
....<<<<<<.<<...<<<<..<<..<<<<<<.....<<<......>>>.
.......>>>>>>..>>......<<<....>>>..>>>>...>>>>>.>>
>...]]]...}}......<<<<<<<...<...<<<<.........>>>>.
..>>>>>>>>..........<<<.<<.<<<<..<<<<<<<.<<<......
..>>>>>>>>>>...>>>>..<<..}}>>...>>.....>>>.]]].<<<
......<<<<....>>>>....>>>..}}}}...<<<.<<<<<<<<..<<
.<<<<<<..<<<.<<<<........<<........>>..........<<<
<<.<....<<<<<........<<.<<<........>>>.>>......>>>
>>...<<.<<<..<<.<<<<<<....<<<.<<<<<....>>>...<<<..
....>>>...>>.>>>....<<<<<.<<<.<<<<....<<<<<<<<<<..
..>>>>>.>>.>>>....>>>>>>>....<<<<<<.....>>>>>>....
...>>>>>....>>>.>>>.....>>>>>>>.....>.>>>>>......>
>>>.>>>.....<<<<<<<......<<.....<<..<<<<....>>>>..
>>....>>.......>>>>>>>......<....<<<<<<..........>
>>>>>....>.....>>>>>>....<<<<<<<<.......>>>>>>>>..
....>>...>>>>>>>>>>.>.....<..<<.<..<<<<.<<....<<<<
<<<<.<<<..<.<....<......<<........................
.....>>.....>..>.>..>>>.>>>>>>>>...>>.>>>>...>.>>.
..>.....<<<<<<<<<....>>>>>>>>>.........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7r Crystal structure of the eukaryotic ribosome.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		K13 T14 H15 S16 Y17 F45 A46 R77 T78 H79 N98 K100 E118 T122 P125 R127 H128
Binding residue
(residue number reindexed from 1)		K5 T6 H7 S8 Y9 F37 A38 R69 T70 H71 N90 K92 E110 T114 P117 R119 H120
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0000054 ribosomal subunit export from nucleus
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v7r, PDBe:4v7r, PDBj:4v7r
PDBsum4v7r
PubMed21109664
UniProtQ01855|RS15_YEAST Small ribosomal subunit protein uS19 (Gene Name=RPS15)

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