Structure of PDB 4v7e Chain CF Binding Site BS01

Receptor Information
>4v7e Chain CF (length=244) Species: 4565 (Triticum aestivum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARA
EQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPLFVVRIRGINAMHPK
TKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELI
YKRGYGKLNKQRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEA
NNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRMN
Ligand information
>4v7e Chain Aa (length=3391) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcgcgaccccaggucaggcgggacuaccgcugaguuuaagcauauaaaua
agcggaggagaagaaacuuacaaggauuccccuaguaacggcgagcgaac
cgggagcagcccagcuugagaaucgggcggcugugccguccgaauuguag
ucuggagaggcguccucagcgacggaccgggcccaaguccccuggaaagg
ggcgccugggagggugagagccccguccggcccggacccugucgccccac
gaggcgccgucaacgagucggguuguuugggaaugcagcccaaaucgggc
gguagacuccguccaaggcuaaauacaggcgagagaccgauagcgaacaa
guaccgcgagggaaagaugaaaaggacuuugaaaagagagucaaagagug
cuugaaauugccgggagggaagcggaugggggccggcgaugcgccccggc
cguaugcggaacggcucuugcugguccgccgcucggcucggggcguggac
uguugucggccgcgccggcggccaaagcccgggggcuccgcgcccccggc
agccgucgucggcacggccgguacccgcgcgccgaaaggcgugccccucg
gggcacugcgcugcaacgcccugcgggcuccccauccgacccgucuugaa
acacggaccaaggagucugacaugcgugcgagucgacggguucugaaacc
ugggaugcgcaaggaagcugacgagcgggaggcccucacgggccgcaccg
cuggccgacccugaucuucugugaaggguucgaguuggagcacgccuguc
gggacccgaaagauggugaacuaugccugagcggggcgaagccagaggaa
acucugguggaggcucgaagcgauacugacgugcaaaucguucgucugac
uuggguauaggggcgaaagacuaaucgaaccaucuaguagcugguucccu
ccgaaguuucccucaggauagcuggagcccauuacgaguucuaucaggua
aagccaaugauuagaggcauuggggacgcaacguccucgaccuauucuca
aacuuuaaauagguaggauggcgcggcugcuucggugagccgugccaugg
aaucgggugcuccaagugggccauuuuugguaagcagaacuggcgaugcg
ggaugaaccggaagccggguuacggugcccaacugcgcgcuaaccuagaa
cccacaaaggguguuggucgauuaagacagcaggacgguggucauggaag
ucgaaauccgcuaaggaguguguaacaacucaccugccgaaucaacuagc
cccgaaaauggauggcgcugaagcgcgcgacccacacccggccaucuggg
cgagugccaugccccgaugaguaggagggcgcggcggccgaugcaaaacc
cggggcgcgagcccgggcggagcggccgucggugcagaucuuggugguag
uagcaaauauucaaaugagaacuuugaaggccgaagaggagaaagguucc
augugaacggcacuugcacauggguaagccgauccuaagggaagggguaa
ccccggcagauagcgcgaucacgcgcauccccgaaagggaaucggguuaa
gauuucccgagccgggauguggcgguugacggcgacguuaggaaguccgg
agacgccggcgggggccucgggaagaguuaucuuuucugcuuaacggccu
gccaacccuggaaacgguucagccggagguaggguccaguggccggaaga
gcacacgucgcgcgguguccggugcgcccccggcggcccaugaaaauccg
gaggaccgaguaccguucacgcccggucguacucauaaccgcaucagguc
uccaaggugaacagccucuggccaauggaacaauguaggcaagggaaguc
ggcaaaacggauccguaacuucgggaaaaggauuggcucugaggacuggg
cucgggggucccggccccgaacccgucggcugucggcggauugcucgagc
ugcucacgcggcgagagcgggucgccgcgugccggccgggggacggaccg
ggaaucgccccuucgggggcuuuccccgagcaugaaacagucgacucaga
acugguacggacaaggggaauccgacuguuuaauuaaaacaaagcauugc
gaugguccucgcggaugcugacgcaaugugugauuucugcccagugcucu
gaaugucaaagugaagaaauucaaccaagcgcggguaaacggcgggagua
acuaugacucucuuaagguagccaaaugccucgucaucuaauuagugacg
cgcaugaaugaauggauuaacgagauucccacugucccugucuacuaucc
agcgaaaccacagccaagggaacgggcuuggcggaaucagcggggaaaga
agacccuguugagcuugacucuaguccgacuuugugaaaugacuugagag
guguaggauaagugggagcccucacgggcgcaagugaaauaccacuacuu
uuaacguuauuuuacuuauuccgugggucggaagcggggcaugccccucc
uuuuggcuccaaggcccggucuuaccgggccgauccgggcggaagacauu
gucagguggggaguuuggcuggggcggccaaucuguuaaaagauaacgca
gguguccuaagaugagcucaacgagaacagaaaucucguguggaacaaaa
ggguaaaagcucguuugauucugauuuccaguacgaauacgaaccgugaa
agcguggccuaucgauccuuuagacuucggaguuugaagcuagagguguc
agaaaaguuaccacagggauuacuggcuuguggcagccaagcguucauag
cgacguugcuuuuugauccuucgaugucggcucuuccuaucauugcgaag
cagaauucaccaaguguuggauuguucacccaccaauagggaacgugagc
uggguuuagaccgucgugagacagguuaguuuuacccuacugaugacagu
gucgcgauaguaauucaaccuaguacgagaggaaccguugauucacacaa
uuggucaucgcgcuugguugaaaagccaguggcgcgaagcuaccgugugc
cggauuaugacugaacgccucuaagucagaauccaagcuagcaugcgacg
ccugcgcccgccgcccgccccgacccacguuaggggcgcuugcgccccca
agggcccgugccauuggcuaagccgguccggccgaagugccgcggucggc
cgccucgaagcucccuucccaacgggcggugggcugaauccuuugcagac
gacuuaaauacgcgacggggcauuguaaguggcagaguggccuugcugcc
acgauccacugagauccaguccccgcgucgcacggauucgu
..........................<<<<<.....<......>......
>>>>>...........<<....>>..<<<<<.......<.....>.....
.>>>>>..<<<...........<<<<<<<<<...>>>>>>>>>.......
......<<<<<<.<<<<.<<<<<<<.<<<<<<<.....<<<<......>>
>>.((......<<<.....))>>>....>>>>>>>...>>>>>>>.....
>>>>>>>>.>>........<<<<<<<........>>>>>>>.....<<<<
<..((((((>>>>>..>>>...............................
...<<....>>...............<<<<....>>>>............
........................<<<<<<<<<<.<<...<<<<<<<<<<
<<..<<<<<<.<<<<....>>>>.>>>>.>>..>>>>.>>>>>>>>....
<<<<<<<<<<<<.<<<<<<<<.......<<<<<<<<.....>>>>>>>>.
.....>>>>>>>>.>>>>>>>.....<<<<<<<....>>><<<<<<....
>>>>>>.>>>>..>>>>>....>>.>>>.>>>>>>>....<<<<......
..>>>><<<<<<.....<<<<<.<<<<<<..<<<...<<.<.....>.>>
...>>>...<......>......<<<<<..<<<<<....>>>>>...>>>
>><<<<<<<<<....<....>....>>>.>>>.>>>...>>>>>>.>>>>
>...<<.<..<<<<<<<.....<<<<<<<<<..<<<....<<<<<<<...
.>>>>>>>.....>>>...<<<<.<<.<<........>>>>>>>>....>
>>>>>>>>...<<.......>>......>>>>>>...>..>.>>..<<<<
<<....<.<<<....>>>.><<<<<<<<.<....<<<.<<<<<<<.....
<<<....<<<....<<<....<<<<<<.....>>>>>>..>>>....>>>
..>>.>.....>>>>>...<<<<<<<<<.........>>>>>>>>>....
>>>>>.>.>>>>>>.>>..<<<<.<<<<<.....>>>>>.>>>>....<<
<......>>>...<<<<<<<...<<<(((.....<<<<<<......<<..
........<<<.<<<<<<.<<<.......<<<<<.<<.....<.......
..>.....>>.........<<......>>...>>>>>...>>>.>>>>>>
>>>..........))).>>...>>>>>>.>>>...>>>>>>><<<<.<<<
<.........>>>>.>>>>....>>>>>><<<<<<<<<<<........<<
<.<<<<....>>>>>>>.....>>>>>>>>>.>>.....>>>>>><<...
..<<.....<<<<<<.......>>>>>><<<<.....<<<<<.<<...<<
<<<<...<<.....>>.>>>>>>....((<<<<<<...<<<...<<<...
.>>>........<<<<<....>>>>>...>>>....>>...<<<<<....
....>>>.>>))<<<<.<<<<..<....<<<....>>>.......<<<<<
<...<<<<.<<<<<<<.<<<<<.<<<<...[[..>>>>.><...<<<<<.
....<<<<<<.....<<.....>>.....>>>>>>.....>>>>>....>
<<<<..........>>>>>>>>...>>>>>>>.>>>>.........>>>>
>>..........>....>>>>>>>>>>>>..>>.....<<......>>>>
>>>.<<<<.....>>>>..>>>>..<<<<.....<<<<<<<.<<......
.........<<<<<....<....>.....>>>>><<.<<<<<<<<<<<.<
<<<<<<<.<<<<<<..<<<..<<<<<<<<<<<.<<<<<<.<<<<<<..<<
<<<....>>>>>..>>>>>>.>>>>>>>>.>>>>>>..>>>..>>>.>>>
>>>...<<<<......>>>>...>>>>>>>>......>>>>>..>>>>>>
.>>............<<<<<<<<<..<<<.........>>>..<<<..<<
....<<<<....>>>>......>>....>>>...<<<.<<<..<<<<<<.
<...<<.....<<<<....>>>>.....>>.>>>>>..>>>>><<<<<<.
......>>>>>>........<...........<<<<<.......>>>>>.
....>....>>>........>>.>>>>>>>.....>>.>>>>>>>..>>>
>>>....>>....<<<<<........>>>>>....<<<<<..<<<.<<..
....<<<<.<<<<<<..<<<<<.<<<.<<<...<<<<<<<<<<<<<<<<<
...........<<<<..<<<<....>>>>............>>>>..>>>
>>>>.>>>>>>>>>>...<<<<<.....<<<<...<<<..........>>
>................<<<<<....>>>>>..>>>>..>>>>>......
>>>.>>>..>>>>>...<<<.....>>>..<<<<<<...........>>>
>>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<...(
((>>....>>>>>>>...<<<.<<<<<.......>>>>.>>>>.<<<...
.>>>.>>)))......<<<<<<<.<<<<.))))))>>>>>>>>>>>....
.....>>>>..>>>>>>.......<<.<.<.<<<<<<...<<.......>
>...>>>>>>...>>.>.>.......<<<<<.<<<<<<..<<<.<.<<<.
.....>>>.>...>>>.<<<.<.....>.>>>.....>>>>>..>...>>
>.>>....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>....<<
<<<<<..<<<<.<.<<<<<.................>>>>>.><<<<<..
.<<<<....<<<<<<<<<.]]...>>>>..>>>>>...>>>>..>>>>>.
.<<<...<<<<<...........>>>>>...>>>..>>>>....>>>>>>
>....<<<<<<<<<<<<......<<<......<<<<..<....>.>>>>.
.>>>...........<<<...<<<<<<.<<<<......>>>>.>.>>>>>
.>>>..................>>>>>>>>>>>>.<<<<<.<........
.....>.........<<<<<.<<<....<<<<....<<<<<......>>>
>>...>>>>...>>>....>>>>.>.........>>>>>..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB4v7e Structures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion.
Resolution5.5 Å
Binding residue
(original residue number in PDB)
S3 K7 P99 K100 K103 I104 L107 R109 K120 K123 A124 N127 M128 R131 Q161 W205 K219 Q238 R241
Binding residue
(residue number reindexed from 1)
S3 K7 P99 K100 K103 I104 L107 R109 K120 K123 A124 N127 M128 R131 Q161 W205 K219 Q238 R241
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cellular Component
GO:0005840 ribosome

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:4v7e, PDBe:4v7e, PDBj:4v7e
PDBsum4v7e
PubMed24499919
UniProtQ5I7K6

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