Structure of PDB 9cai Chain CD Binding Site BS01

Receptor Information
>9cai Chain CD (length=289) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIV
RITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGL
LLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTT
TGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHV
ADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPA
AKKAAKPSKRHTAKRLTYDERKQRVADKKALLLQLKEQQ
Ligand information
>9cai Chain A7 (length=119) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcuuacgaccauaucacguugaaugcacgccaucccguccgaucuggcaa
guuaagcaacguugaguccaguuaguacuuggaucggagacggccuggga
auccuggauguuguaagcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<......<<.<<..<<....>>.>>.>>..
...>>>>>>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9cai High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.59 Å
Binding residue
(original residue number in PDB)
K10 F13 K14 V18 L20 R21 R22 R24 K27 T28 Y30 R33 R50 R54 T56 N57 K58 Q63 I69 E70 G71 D72 V74 Y79 N94 R151 K157 F180 Q184 R197 H202 V203 Y206 Y209 R220 Q221 S223 K224 F225 K255 K259 S261 R263 H264 T265 A266 R268 L269 Y271 R274 R277 V278 K281 K282
Binding residue
(residue number reindexed from 1)
K7 F10 K11 V15 L17 R18 R19 R21 K24 T25 Y27 R30 R47 R51 T53 N54 K55 Q60 I66 E67 G68 D69 V71 Y76 N91 R148 K154 F177 Q181 R194 H199 V200 Y203 Y206 R217 Q218 S220 K221 F222 K252 K256 S258 R260 H261 T262 A263 R265 L266 Y268 R271 R274 V275 K278 K279
External links
PDB RCSB:9cai, PDBe:9cai, PDBj:9cai
PDBsum9cai
PubMed39209556
UniProtP49405|RL5_CAEEL Large ribosomal subunit protein uL18 (Gene Name=rpl-5)

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