Structure of PDB 9bh5 Chain CD Binding Site BS01

Receptor Information
>9bh5 Chain CD (length=289) Species: 6239 (Caenorhabditis elegans) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKVIKNKAYFKRYQVKLRRRREGKTDYYARKRLTVQDKNKYNTPKYRLIV
RITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGL
LLARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTT
TGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHV
ADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPA
AKKAAKPSKRHTAKRLTYDERKQRVADKKALLLQLKEQQ
Ligand information
>9bh5 Chain A7 (length=119) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gcuuacgaccauaucacguugaaugcacgccaucccguccgaucuggcaa
guuaagcaacguugaguccaguuaguacuuggaucggagacggccuggga
auccuggauguuguaagcu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
>>....>>>>>>.>><<<<<<......<<.<<..<<....>>.>>.>>..
...>>>>>>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bh5 High-Resolution Reconstruction of a C. elegans Ribosome Sheds Light on Evolutionary Dynamics and Tissue Specificity.
Resolution2.63 Å
Binding residue
(original residue number in PDB)		K10 F13 V18 L20 R21 R22 R24 T28 Y30 R33 R50 R54 T56 N57 Q63 E70 G71 D72 V74 N94 R151 T153 T154 S156 K157 F180 Q184 R197 H202 Y206 R220 Q221 F222 K224 F225 K255 K256 K259 S261 H264 T265 A266 R268 L269 Y271 R274 R277 V278 K281 K282
Binding residue
(residue number reindexed from 1)		K7 F10 V15 L17 R18 R19 R21 T25 Y27 R30 R47 R51 T53 N54 Q60 E67 G68 D69 V71 N91 R148 T150 T151 S153 K154 F177 Q181 R194 H199 Y203 R217 Q218 F219 K221 F222 K252 K253 K256 S258 H261 T262 A263 R265 L266 Y268 R271 R274 V275 K278 K279
External links
PDB RCSB:9bh5, PDBe:9bh5, PDBj:9bh5
PDBsum9bh5
PubMed39209556
UniProtP49405|RL5_CAEEL Large ribosomal subunit protein uL18 (Gene Name=rpl-5)

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