Structure of PDB 8xjv Chain CD Binding Site BS01

Receptor Information
>8xjv Chain CD (length=97) Species: 8355 (Xenopus laevis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEET
RGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG
Ligand information
>8xjv Chain Au (length=2116) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gagcatccggatcccctggagaatcccggtgccgaggccgctcaattggt
cgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcg
ttttaaccgccaaggggattactccctagtctccaggcacgtgtcacata
tatacatcctgttccagtgggacccgagcatccggatcccctggagaatc
ccggtgccgaggccgctcaattggtcgtagacagctctagcaccgcttaa
acgcacgtacgcgctgtcccccgcgttttaaccgccaaggggattactcc
ctagtctccaggcacgtgtcacatatatacatcctgttccagtgccggac
ccgagcatccggatcccctggagaatcccggtgccgaggccgctcaattg
gtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcccccg
cgttttaaccgccaaggggattactccctagtctccaggcacgtgtcaca
tatatacatcctgttccagtgccggacccgagcatccggatcccctggag
aatcccggtgccgaggccgctcaattggtcgtagacagctctagcaccgc
ttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaaggggatta
ctccctagtctccaggcacgtgtcacatatatacatcctgttccagtgcc
ggacccgagcatccggatcccctggagaatcccggtgccgaggccgctca
attggtcgtagacagctctagcaccgcttaaacgcacgtacgcgctgtcc
cccgcgttttaaccgccaaggggattactccctagtctccaggcacgtgt
cacatatatacatcctgttccagtgccggacccgagcatccggatcccct
ggagaatcccggtgccgaggccgctcaattggtcgtagacagctctagca
ccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaagggg
attactccctagtctccaggcacgtgtcacatatatacatcctgttccag
tgccggacccgagcatccggatcccctggagaatcccggtgccgaggccg
ctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacgcgct
gtcccccgcgttttaaccgccaaggggattactccctagtctccaggcac
gtgtcacatatatacatcctgttccagtgccggacccgagcatccggatc
ccctggagaatcccggtgccgaggccgctcaattggtcgtagacagctct
agcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccgccaa
ggggattactccctagtctccaggcacgtgtcacatatatacatcctgtt
ccagtgccggacccgagcatccggatcccctggagaatcccggtgccgag
gccgctcaattggtcgtagacagctctagcaccgcttaaacgcacgtacg
cgctgtcccccgcgttttaaccgccaaggggattactccctagtctccag
gcacgtgtcacatatatacatcctgttccagtgccggacccgagcatccg
gatcccctggagaatcccggtgccgaggccgctcaattggtcgtagacag
ctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgttttaaccg
ccaaggggattactccctagtctccaggcacgtgtcacatatatacatcc
tgttccagtgccggacccgagcatccggatcccctggagaatcccggtgc
cgaggccgctcaattggtcgtagacagctctagcaccgcttaaacgcacg
tacgcgctgtcccccgcgttttaaccgccaaggggattactccctagtct
ccaggcacgtgtcacatatatacatcctgttccagtgccggacccgagca
tccggatcccctggagaatcccggtgccgaggccgctcaattggtcgtag
acagctctagcaccgcttaaacgcacgtacgcgctgtcccccgcgtttta
accgccaaggggattactccctagtctccaggcacgtgtcacatatatac
atcctgttccagtgcc
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8xjv Structural basis for linker histone H5-nucleosome binding and chromatin fiber compaction.
Resolution3.6 Å
Binding residue
(original residue number in PDB)		K291 G292 K294 K298 G299 K302 K306 L308 R321 R325 R331 I332 S333 G334 K365 T366
Binding residue
(residue number reindexed from 1)		K1 G2 K4 K8 G9 K12 K16 L18 R31 R35 R41 I42 S43 G44 K75 T76
External links
PDB RCSB:8xjv, PDBe:8xjv, PDBj:8xjv
PDBsum8xjv
PubMed39103524
UniProtP62799|H4_XENLA Histone H4

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