Structure of PDB 8ci0 Chain CCC Binding Site BS01

Receptor Information
>8ci0 Chain CCC (length=666) Species: 4577 (Zea mays) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AATGELLEKSVNTIRFLAIDAVEKANSGHPGLPMGCAPMGHVLYDEVMRY
NPKNPYWFNRDRFVLSAGHGCMLQYALLHLAGYDSVKEEDLKQFRQWGSR
TPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVD
HYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIA
FTEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKAVTDKPTLIKVTT
TIGFGSPNKANSYSVHGSALGAKEVEATRQNLGWPYDTFFVPEDVKSHWS
RHTPEGAALEADWNAKFAEYEKKYADDAATLKSIITGELPTGWVDALPKY
TPESPGDATRNLSQQCLNALANVVPGLIGGSADLASSNMTLLKMFGDFQK
DTAEERNVRFGVREHGMGAICNGIALHSPGFVPYCATFFVFTDYMRGAMR
ISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLVSFRAMPNILMLRPADG
NETAGAYKVAVLNRKRPSILALSRQKLPHLPGTSIEGVEKGGYTISDNST
GNKPDLIVMGTGSELEIAAKAADELRKEGKTVRVVSFVSWELFDEQSDEY
KESVLPAAVTARISIEAGSTLGWQKYVGAQGKAIGIDKFGASAPAGTIYK
EYGITVESIIAAAKSF
Ligand information
Ligand IDUP0
InChIInChI=1S/C16H22O7/c1-3-5-9-13(16(22)23)10(15(20)21)6-8(4-2)11(17)7-12(18)14(9)19/h4,9,11,14,17,19H,3,5-7H2,1-2H3,(H,20,21)(H,22,23)/b8-4-,13-10-/t9-,11+,14+/m1/s1
InChIKeyYFQGJJCDYCWLSI-KRKAZGBPSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CCC[C@H]/1[C@H](O)C(=O)C[C@H](O)\C(CC(=C/1C(O)=O)/C(O)=O)=C/C
OpenEye OEToolkits 2.0.7CCCC1C(C(=O)CC(C(=CC)CC(=C1C(=O)O)C(=O)O)O)O
OpenEye OEToolkits 2.0.7CCC[C@H]/1[C@@H](C(=O)C[C@@H](/C(=C\C)/C/C(=C1/C(=O)O)/C(=O)O)O)O
CACTVS 3.385CCC[CH]1[CH](O)C(=O)C[CH](O)C(CC(=C1C(O)=O)C(O)=O)=CC
FormulaC16 H22 O7
Name(1~{Z},3~{R},4~{S},7~{S},8~{Z})-8-ethylidene-4,7-bis(oxidanyl)-5-oxidanylidene-3-propyl-cyclononene-1,2-dicarboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8ci0 Chain CCC Residue 1000 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8ci0 Investigations into Simplified Analogues of the Herbicidal Natural Product (+)-Cornexistin.
Resolution1.902 Å
Binding residue
(original residue number in PDB)
G37 G276
Binding residue
(residue number reindexed from 1)
G28 G267
Annotation score1
Enzymatic activity
Enzyme Commision number 2.2.1.1: transketolase.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004802 transketolase activity
GO:0005509 calcium ion binding
GO:0016740 transferase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
GO:0050897 cobalt ion binding
Biological Process
GO:0006098 pentose-phosphate shunt
GO:0019253 reductive pentose-phosphate cycle
Cellular Component
GO:0005829 cytosol
GO:0009507 chloroplast
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8ci0, PDBe:8ci0, PDBj:8ci0
PDBsum8ci0
PubMed36807428
UniProtQ7SIC9|TKTC_MAIZE Transketolase, chloroplastic

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