Structure of PDB 6rxt Chain CB Binding Site BS01

Receptor Information
>6rxt Chain CB (length=237) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
IVEPHRHKGVFVARGGKEDLLCTANLVPGESVYGEKRISVETPGSGPDAV
ATKTEYRIWNPFRSKLAAGILGGLETIYMKPGSKVLYLGAASGTSVSHVA
DIVGPTGAVYAVEFSHRSGRDLINMATRRTNVIPIVEDARKPMAYRMLVP
MVDVIFADVAQPDQARIVGINARLFLKQGGGLLISIKASCIDSTAPPEQV
FASEVQKLREDKFFPKEQLTLEPYERDHAMVSCVYLQ
Ligand information
>6rxt Chain C2 (length=230) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
agcgacaauacuucagagaaucauuucuauaguaguuguccucucuugug
uuuccuaaaggagccacagaucccacccggguugaugaacgagauccucg
gcgccagugagguccauuuacucucgcucuaccugcaaagguggcggucg
cgugccucgucucgcggcuguauagagaguggcgaugaucuguaccccgc
ggggugggugucgauggaagucugaccggc
..................................................
..........................<<<<......<.......<<<<<<
<<<<.<<............<<<<<<...<<<<<<....>>>>>><<<<<<
<<.<......>.>>>>>>>>....>>>>>>.........>>.<<<<<<..
>>>>>>.>>>>>>>.>>>...>...>>>>.
Receptor-Ligand Complex Structure
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PDB6rxt Thermophile 90S Pre-ribosome Structures Reveal the Reverse Order of Co-transcriptional 18S rRNA Subdomain Integration.
Resolution7.0 Å
Binding residue
(original residue number in PDB)		R108 G117 P118
Binding residue
(residue number reindexed from 1)		R37 G46 P47
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0008168 methyltransferase activity
GO:0008649 rRNA methyltransferase activity
GO:1990259 histone H2AQ104 methyltransferase activity
Biological Process
GO:0000494 box C/D sno(s)RNA 3'-end processing
GO:0006338 chromatin remodeling
GO:0006364 rRNA processing
GO:0031167 rRNA methylation
GO:0032259 methylation
Cellular Component
GO:0005730 nucleolus
GO:0031428 box C/D methylation guide snoRNP complex
GO:0032040 small-subunit processome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6rxt, PDBe:6rxt, PDBj:6rxt
PDBsum6rxt
PubMed31378463
UniProtG0SGY2

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