Structure of PDB 7qep Chain C5 Binding Site BS01

Receptor Information

>7qep Chain C5 (length=116) Species: 284813 (Encephalitozoon cuniculi GB-M1)

RYTYRGVPVEELEKMPFSEVAKLFPSRLRRRVRRGLSSREVELIKGCIAA
KAACVSSSSKPEMVRTHARSAIIWPAMIGALVGVHVGNGYLPVEIKPEMV
GFVLSDFAPTRVTPKH

Ligand information

>7qep Chain 3 (length=1295)

aucagguugauucugccugacguggaugcuauucucuggggcuaagccau
gcaugcuugugaacucuuugugggggauuagcggacggcucagugauagc
acgaugauuuguuugcgggaugagcaguagcugcgggaaacugcagauag
uggucugccccuguggggguuggcaaguaaguugugggccuaucagcugg
uaguuaggguaauggccuaacuaggcgcagacgggauacgggggaucagg
guuugguuccggagagggagccugagagauggcuacuacguccaaggaug
gcagcaggcgcgaaacuugccuaauccuuuggggaggcgguuaugagaag
ugaugugugugcgagugcaaaggggucgcaugugauuggagggcaagucg
ggugccagcagccgcgguaauaccugcuccaauagugucuaugguggaug
cugcaguuaaaauguccguagucuguguaugucuuugugugugauguuug
ugguuguguguggauguagugaguguguggcagaggacgaggggcacugg
auaguugggcgagaggugaaaugcgaagacccugacuggacgagcggaag
cgaaggcugugcucuuggacuaauguugcgaugaaggacgaaggcuagag
gaucgaaaucgauuagauaccguuuuaguucuagcaguaaacgaugccga
cuggacgggacaguguguguuguccaugagaaaucuugaguaugcggguu
cuggggauaguaugcucgcaagagugaaacuugaagagauugacggaagg
acaccacaaggaguggagugugcggcuuaauuugacucaacgcggggcaa
cuuaccggcucugaaggaugccugugagugcauggcaugaggcaugcggc
gguggugcauggccguuuuaaauggauggcgugagcuuugucuuaaguug
cguaagaugugagacccuuugacgguguucuacggagcaaggaggggaug
gaagagaacagguccguuaugcccugagaugaggcgggcugcacgcgcac
uacgauagauggcgcuucugccugcugugagggaugaagcuguguaaggg
gcuucugaacguggaauuccuaguaauagcggcugacgaagcugcuuuga
augugucccuguccuuuguacacaccgcccgucgcuaucuaagaugacgc
acuggacgaagaucggaaggucugaguccugaguguuagauaagauauaa
gucguaacauggcugcuguuggagaaccagcagcaggaucaguau

..<<<<..[.((((.>>>>.<<<<<<<<<..<<<<<.<.......<<<.<
<<..<<<......<<<.....>>>.....>>>......<<.........<
<<<<<..<<..<<<<<.....<<.<<...<<<<<<......>>>>>.>..
>>.>>.<<<<<....>>>>>..>>>>>.>>>>>>>>..<<<....<<<..
<<<<<<<<.......>>>>>>>>>>>......>>>...<<<<<<<<....
>>>>...>>>>.>>.<<.<<<..........>>>.>>.<<<<....>>>>
...>>>>>>.........<<<....<<....>>..>>>...>..>>>>>.
........<<<<<<.<.......>.>>>>>>....<<<<<((......<<
<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<....<<<<<<<....<<<<<<<.....
..>>>>>>>..>>>>>>>...........<<<.<<..<<.<<<<<<<<.<
.<<<<<<<<...<..........>......>>>>>>>>..>>.......<
<....>>.>>>>>>>>>..>>..>>>...>>>...>>>>....<<<<<<<
...<..<<.<<.<.....>.>>.>>..>>>>>>>>..........<<<.<
<.<<<<<<.<<<...>>>.>>>>>>..<<..))>>....>>.....>>>.
>>>.<<.......<<<<....>>>>.....>>..)))).]<<<<<.<<<<
<<<..<<.<<<<<<..<<<<<<<<<<......<<........>>......
....<<<.<<<......<<<<<.....<<<.....>>>..>>>>>....<
<<.<<<..<<.<<<<<<....<<<...<<<....>>>..<<........>
>......>>>.....<<........<<<<<....>>>>>..........>
>.....>>>.>>>.....>>>>>>>>....>>>.>>>...>>.>>>>>>>
>.....<<..<<<......>>>..>>....<....<<<<<<........>
>>>>>....>.....>>>>>>....<.<<<<<<.......>>>>>>.>..
....>>...>>>>>>>>>>.>>....<..<<.<..<<<<<.<...<<<<<
.<.<<<<..<<<<<....>>>>>..>>>>.>.>>>>>...>.>>>>>...
>.>>...>.....<<<<<<<<<....>>>>>>>>>..........

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7qep Adaptation to genome decay in the structure of the smallest eukaryotic ribosome
• Resolution: 2.7 Å
• Binding residue (original residue number in PDB): S41 R44 R45 R46 R49 R84 H100 G102 N103 T125 R126 P129 H131
• Binding residue (residue number reindexed from 1): S26 R29 R30 R31 R34 R69 H85 G87 N88 T110 R111 P114 H116

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0000028 ribosomal small subunit assembly
• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0015935 small ribosomal subunit
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7qep, PDBe:7qep, PDBj:7qep
• PDBsum: 7qep
• UniProt: Q8SRE7