Structure of PDB 7qep Chain C2 Binding Site BS01

Receptor Information
>7qep Chain C2 (length=118) Species: 284813 (Encephalitozoon cuniculi GB-M1) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EMTLQEALSKVCKVSRTYCKLSRGAKETTKKMLADKMSFVMVAENAEPRI
SKLVMALAKKKNIPVISIGSCLELGRIVGVENVSSSGKVRSKGCCVAGVQ
DYCEQTSEAGFVQAALLK
Ligand information
>7qep Chain 3 (length=1295) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aucagguugauucugccugacguggaugcuauucucuggggcuaagccau
gcaugcuugugaacucuuugugggggauuagcggacggcucagugauagc
acgaugauuuguuugcgggaugagcaguagcugcgggaaacugcagauag
uggucugccccuguggggguuggcaaguaaguugugggccuaucagcugg
uaguuaggguaauggccuaacuaggcgcagacgggauacgggggaucagg
guuugguuccggagagggagccugagagauggcuacuacguccaaggaug
gcagcaggcgcgaaacuugccuaauccuuuggggaggcgguuaugagaag
ugaugugugugcgagugcaaaggggucgcaugugauuggagggcaagucg
ggugccagcagccgcgguaauaccugcuccaauagugucuaugguggaug
cugcaguuaaaauguccguagucuguguaugucuuugugugugauguuug
ugguuguguguggauguagugaguguguggcagaggacgaggggcacugg
auaguugggcgagaggugaaaugcgaagacccugacuggacgagcggaag
cgaaggcugugcucuuggacuaauguugcgaugaaggacgaaggcuagag
gaucgaaaucgauuagauaccguuuuaguucuagcaguaaacgaugccga
cuggacgggacaguguguguuguccaugagaaaucuugaguaugcggguu
cuggggauaguaugcucgcaagagugaaacuugaagagauugacggaagg
acaccacaaggaguggagugugcggcuuaauuugacucaacgcggggcaa
cuuaccggcucugaaggaugccugugagugcauggcaugaggcaugcggc
gguggugcauggccguuuuaaauggauggcgugagcuuugucuuaaguug
cguaagaugugagacccuuugacgguguucuacggagcaaggaggggaug
gaagagaacagguccguuaugcccugagaugaggcgggcugcacgcgcac
uacgauagauggcgcuucugccugcugugagggaugaagcuguguaaggg
gcuucugaacguggaauuccuaguaauagcggcugacgaagcugcuuuga
augugucccuguccuuuguacacaccgcccgucgcuaucuaagaugacgc
acuggacgaagaucggaaggucugaguccugaguguuagauaagauauaa
gucguaacauggcugcuguuggagaaccagcagcaggaucaguau
..<<<<..[.((((.>>>>.<<<<<<<<<..<<<<<.<.......<<<.<
<<..<<<......<<<.....>>>.....>>>......<<.........<
<<<<<..<<..<<<<<.....<<.<<...<<<<<<......>>>>>.>..
>>.>>.<<<<<....>>>>>..>>>>>.>>>>>>>>..<<<....<<<..
<<<<<<<<.......>>>>>>>>>>>......>>>...<<<<<<<<....
>>>>...>>>>.>>.<<.<<<..........>>>.>>.<<<<....>>>>
...>>>>>>.........<<<....<<....>>..>>>...>..>>>>>.
........<<<<<<.<.......>.>>>>>>....<<<<<((......<<
<<.....<<..))>>.......>>>>.>>>>>..>>>>>>>>>.......
...<<<((.....<<<<...<<<....<<<<<<<....<<<<<<<.....
..>>>>>>>..>>>>>>>...........<<<.<<..<<.<<<<<<<<.<
.<<<<<<<<...<..........>......>>>>>>>>..>>.......<
<....>>.>>>>>>>>>..>>..>>>...>>>...>>>>....<<<<<<<
...<..<<.<<.<.....>.>>.>>..>>>>>>>>..........<<<.<
<.<<<<<<.<<<...>>>.>>>>>>..<<..))>>....>>.....>>>.
>>>.<<.......<<<<....>>>>.....>>..)))).]<<<<<.<<<<
<<<..<<.<<<<<<..<<<<<<<<<<......<<........>>......
....<<<.<<<......<<<<<.....<<<.....>>>..>>>>>....<
<<.<<<..<<.<<<<<<....<<<...<<<....>>>..<<........>
>......>>>.....<<........<<<<<....>>>>>..........>
>.....>>>.>>>.....>>>>>>>>....>>>.>>>...>>.>>>>>>>
>.....<<..<<<......>>>..>>....<....<<<<<<........>
>>>>>....>.....>>>>>>....<.<<<<<<.......>>>>>>.>..
....>>...>>>>>>>>>>.>>....<..<<.<..<<<<<.<...<<<<<
.<.<<<<..<<<<<....>>>>>..>>>>.>.>>>>>...>.>>>>>...
>.>>...>.....<<<<<<<<<....>>>>>>>>>..........
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7qep Adaptation to genome decay in the structure of the smallest eukaryotic ribosome
Resolution2.7 Å
Binding residue
(original residue number in PDB)		R27 R34 G35 A36 K37 E38 K41 V91 R101 C105 C106
Binding residue
(residue number reindexed from 1)		R16 R23 G24 A25 K26 E27 K30 V80 R90 C94 C95
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Cellular Component
External links
PDB RCSB:7qep, PDBe:7qep, PDBj:7qep
PDBsum7qep
PubMed
UniProtQ8SSK9

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