Structure of PDB 8ypk Chain C Binding Site BS01

Receptor Information
>8ypk Chain C (length=199) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TTLAFKFLHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAAD
CSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMI
CGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYDLKVEE
AYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRVSSDNVADLHDKYS
Ligand information
Ligand IDA1L0C
InChIInChI=1S/C18H33BN5O5/c1-12(2)9-17(19(27,28)29-13(3)15(20)11-25)21-18(26)16-10-24(23-22-16)14-7-5-4-6-8-14/h10-15,17,27-28H,4-9,20H2,1-3H3,(H,21,26)/t13-,15-,17+/m1/s1
InChIKeyBGAPNVWHFZNTJI-UNEWFSDZSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(C)C[CH](NC(=O)c1cn(nn1)C2CCCCC2)[B](O)(O)O[CH](C)[CH](N)C=O
CACTVS 3.385CC(C)C[C@H](NC(=O)c1cn(nn1)C2CCCCC2)[B](O)(O)O[C@H](C)[C@H](N)C=O
OpenEye OEToolkits 2.0.7B(C(CC(C)C)NC(=O)c1cn(nn1)C2CCCCC2)(O)(O)OC(C)C(C=O)N
OpenEye OEToolkits 2.0.7B([C@H](CC(C)C)NC(=O)c1cn(nn1)C2CCCCC2)(O)(O)O[C@H](C)[C@@H](C=O)N
FormulaC18 H33 B N5 O5
Name[(2~{R},3~{S})-3-azanyl-4-oxidanylidene-butan-2-yl]oxy-[(1~{R})-1-[(1-cyclohexyl-1,2,3-triazol-4-yl)carbonylamino]-3-methyl-butyl]-$l^{3}-oxidanyl-oxidanyl-boron
ChEMBL
DrugBank
ZINC
PDB chain8ypk Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ypk Optimization of alpha-amido boronic acids via cryo-electron microscopy analysis: Discovery of a novel highly selective immunoproteasome subunit LMP7 ( beta 5i)/LMP2 ( beta 1i) dual inhibitor.
Resolution2.7 Å
Binding residue
(original residue number in PDB)
T2 A20 T21 K33 A46 G47 A49 G129 S130
Binding residue
(residue number reindexed from 1)
T1 A19 T20 K32 A45 G46 A48 G128 S129
Annotation score1
External links
PDB RCSB:8ypk, PDBe:8ypk, PDBj:8ypk
PDBsum8ypk
PubMed38906067
UniProtO55234|PSB5_MOUSE Proteasome subunit beta type-5 (Gene Name=Psmb5)

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