Structure of PDB 8yf8 Chain C Binding Site BS01

Receptor Information

>8yf8 Chain C (length=305) Species: 292633 (Dragon grouper nervous necrosis virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

RSNRTDAPVSKASTVTGFGRGTNDVHLSGMSRISQAVLPAGTGTDGYVVV
DATIVPDLLPRLGHAARIFQRYAVETLEFEIQPMCPANTGGGYVAGFLPD
PTDNDHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSP
GRLILLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEETTAPIMTQGSLYN
DSLSTNDFKSILLGSTPLDIAPDGAVFQLDRPLSIDYSLGTGDVDRAVYW
HLKKFAGNAGTPAGWFRWGIWDNFNKTFTDGVAYYSDEQPRQILLPVGTV
CTRVD

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

8yf8 Chain A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8yf8 Molecular Mechanism of pH-Induced Protrusion Configuration Switching in Piscine Betanodavirus Implies a Novel Antiviral Strategy.
Resolution	3.52 Å
Binding residue (original residue number in PDB)	D130 D133
Binding residue (residue number reindexed from 1)	D100 D103
Annotation score	4

External links

PDB	RCSB:8yf8, PDBe:8yf8, PDBj:8yf8
PDBsum	8yf8
PubMed	39087906
UniProt	Q9E6H7

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