Structure of PDB 8y4j Chain C Binding Site BS01

Receptor Information
>8y4j Chain C (length=249) Species: 863372 (Herbaspirillum huttiense) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GRLAGKTVLITAAAQGIGRASTELFAREGARVIATDISKTHLEELASIAG
VETHLLDVTDDDAIKALVAKVGTVDVLFNCAGYVAAGNILECDDKAWDFS
FNLNAKAMFHTIRAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASK
AAVVGLTKSVAADFVSQGIRCNAICPGTIESPSLNQRISTQAKETGKSED
EVRAAFVARQPMGRIGKAEEVAALALYLASDESNFTTGSIHMIDGGWSN
Ligand information
Ligand IDA1LXD
InChIInChI=1S/C5H8O5/c6-3-1-5(9,4(7)8)10-2-3/h3,6,9H,1-2H2,(H,7,8)/t3-,5-/m0/s1
InChIKeyDONPUMGGARYEMQ-UCORVYFPSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O[C@@H]1CO[C@@](O)(C1)C(O)=O
OpenEye OEToolkits 2.0.7C1C(COC1(C(=O)O)O)O
OpenEye OEToolkits 2.0.7C1[C@@H](CO[C@@]1(C(=O)O)O)O
CACTVS 3.385O[CH]1CO[C](O)(C1)C(O)=O
FormulaC5 H8 O5
NameD-2-keto-3-deoxypentonate;
(2~{S},4~{S})-2,4-bis(oxidanyl)oxolane-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8y4j Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8y4j Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a alpha-furanosyl hemiketal of substrates.
Resolution1.51 Å
Binding residue
(original residue number in PDB)
R148 Y151 G182 T183 R192 R214
Binding residue
(residue number reindexed from 1)
R143 Y146 G177 T178 R187 R209
Annotation score1
Gene Ontology
Molecular Function
GO:0016491 oxidoreductase activity

View graph for
Molecular Function
External links
PDB RCSB:8y4j, PDBe:8y4j, PDBj:8y4j
PDBsum8y4j
PubMed38918500
UniProtA0AAE4G800

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