Structure of PDB 8xmb Chain C Binding Site BS01

Receptor Information

>8xmb Chain C (length=291) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

TYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVE
IEVNSSVLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSV
EFRLSSKCVTDQTLDVTSRDLYSADPTVTPVDFHKGIIIVKLRRGQELKL
RAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIES
SPTKVFGMDPVTRQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEISPKDDS
FIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSDDTVEAD

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8xmb Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8xmb Transcription of the Plant RNA polymerase IV is prone to backtracking
Resolution	3.4 Å
Binding residue (original residue number in PDB)	C90 C93 C102
Binding residue (residue number reindexed from 1)	C86 C89 C98
Annotation score	4

Gene Ontology

	Molecular Function
GO:0005515	protein binding

	Biological Process
GO:0010374	stomatal complex development
GO:0010375	stomatal complex patterning

	Cellular Component
GO:0000418	RNA polymerase IV complex
GO:0000419	RNA polymerase V complex
GO:0000428	DNA-directed RNA polymerase complex
GO:0005634	nucleus
GO:0005665	RNA polymerase II, core complex
GO:0005730	nucleolus
GO:0005737	cytoplasm

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8xmb, PDBe:8xmb, PDBj:8xmb
PDBsum	8xmb
PubMed
UniProt	Q39211\|NRPB3_ARATH DNA-directed RNA polymerases II, IV and V subunit 3 (Gene Name=NRPB3)

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