Structure of PDB 8v2k Chain C Binding Site BS01

Receptor Information
>8v2k Chain C (length=465) Species: 585 (Proteus vulgaris) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKRIVEPFRIKMVEKIRVPSREEREAALKEAGYNPFLLPSSAVYIDLLTD
SGTNAMSDHQWAAMITGDEAYAGSRNYYDLKDKAKELFNYDYIIPAHQGR
GAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVT
EKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPV
SMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIF
DMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTY
GGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTG
GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPA
TGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEY
EPPVLRHFTARLKPI
Ligand information
Ligand IDPLI
InChIInChI=1S/C11H15N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3-4,12,14H,5H2,1-2H3,(H,15,16)(H2,17,18,19)/b9-4-,13-7+
InChIKeyADVVJYVQWSKPQC-ZAQQZXBOSA-N
SMILES
SoftwareSMILES
CACTVS 3.341CC1=C(O)C(=CN=C(C)C(O)=O)C(=CN1)CO[P](O)(O)=O
OpenEye OEToolkits 1.5.0CC1=C(C(=CN=C(C)C(=O)O)C(=CN1)COP(=O)(O)O)O
OpenEye OEToolkits 1.5.0CC1=C(/C(=C\N=C(/C)\C(=O)O)/C(=CN1)COP(=O)(O)O)O
CACTVS 3.341CC1=C(O)C(=C\N=C(C)C(O)=O)/C(=CN1)CO[P](O)(O)=O
ACDLabs 10.04O=C(O)/C(=N/C=C1\C(O)=C(NC=C1COP(=O)(O)O)C)C
FormulaC11 H15 N2 O7 P
Name(2E)-2-{[(Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4(1H)-YLIDENE}METHYL]IMINO}PROPANOIC ACID
ChEMBL
DrugBank
ZINCZINC000058638361
PDB chain8v2k Chain C Residue 504 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v2k Proteus vulgaris tryptophan indole-lyase complexed with L-alanine
Resolution1.81 Å
Binding residue
(original residue number in PDB)		T50 Q99 G100 R101 F132 N194 D223 R226 S263 K266 R414
Binding residue
(residue number reindexed from 1)		T49 Q98 G99 R100 F131 N193 D222 R225 S262 K265 R413
Annotation score1
Enzymatic activity
Enzyme Commision number 4.1.99.1: tryptophanase.
Gene Ontology
Molecular Function
GO:0009034 tryptophanase activity
GO:0016829 lyase activity
GO:0016830 carbon-carbon lyase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006568 tryptophan metabolic process
GO:0006569 tryptophan catabolic process
GO:0009072 aromatic amino acid metabolic process

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8v2k, PDBe:8v2k, PDBj:8v2k
PDBsum8v2k
PubMed
UniProtP28796|TNAA_PROVU Tryptophanase (Gene Name=tnaA)

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