Structure of PDB 8v07 Chain C Binding Site BS01

Receptor Information
>8v07 Chain C (length=408) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QRPAPCYDPCEAVLVESIPEGLEFPNNPSTSQAWLGLLAGAHSSLDIASF
YWTLTNNDTHTQEPSAQQGEEVLQQLQALAPRGVKVRIAVSKPNGPLADL
QSLLQSGAQVRMVDMQKLTHGVLHTKFWVVDQTHFYLGSANMDWRSLTQV
KELGVVMYNCSCLARDLTKIFEAYWFLGQAGSSIPSTWPRSFDTRYNQET
PMEICLNGTPALAYLASAPPPLCPSGRTPDLKALLNVVDSARSFIYIAVM
NYLPTMHPRRFWPAIDDGLRRAAYERGVKVRLLISCWGHSDPSMRSFLLS
LAALHDNHTHSDIQVKLFVVPTDESQARIPYARVNHNKYMVTERASYIGT
SNWSGSYFTETAGTSLLVTQNGGLRSQLEAVFLRDWESPYSHDLDTSANS
VGNACRLL
Ligand information
Ligand IDMAN
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6+/m1/s1
InChIKeyWQZGKKKJIJFFOK-PQMKYFCFSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namealpha-D-mannopyranose;
alpha-D-mannose;
D-mannose;
mannose
ChEMBLCHEMBL365590
DrugBank
ZINCZINC000003860903
PDB chain8v07 Chain E Residue 5 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8v07 Crystal structures of exonucleases PLD3 and PLD4
Resolution1.99 Å
Binding residue
(original residue number in PDB)		H117 D206 T208 H209
Binding residue
(residue number reindexed from 1)		H42 D131 T133 H134
Annotation score4
Enzymatic activity
Enzyme Commision number 3.1.16.1: spleen exonuclease.
Gene Ontology
Molecular Function
GO:0003824 catalytic activity

View graph for
Molecular Function
External links
PDB RCSB:8v07, PDBe:8v07, PDBj:8v07
PDBsum8v07
PubMed38537643
UniProtO35405|PLD3_MOUSE 5'-3' exonuclease PLD3 (Gene Name=Pld3)

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