Structure of PDB 8uhe Chain C Binding Site BS01

Receptor Information
>8uhe Chain C (length=164) Species: 91464 (Synechococcus sp. PCC 7335) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SIVKQIISNADEELRYPTPGELEMIRSFCKTGASQIQLAKTLESHAPTIV
ERGTRKFWQICPRTPSNSGSPRKTEAAQRDMSWYIRLISYCLLAGNDQPL
REIGLLGMKELYTNIGIPLDNILQYLRCLKAEAIALLSEAEAEAIIPYFD
QIIQELVRPGPSYF
Ligand information
Ligand IDM1V
InChIInChI=1S/C33H38N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h13-15,35H,7-12H2,1-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13-,27-14-,28-15-
InChIKeyCXQHEXWJGZEPFP-BBROENKCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6CCC1=C(/C(=C/C2=N/C(=C\c3c(c(c([nH]3)/C=C\4/C(=C(C(=O)N4)C)CC)C)CCC(=O)O)/C(=C2C)CCC(=O)O)/NC1=O)C
CACTVS 3.385CCC1=C(C)\C(NC1=O)=C\C2=NC(=C\c3[nH]c(\C=C4/NC(=O)C(=C4CC)C)c(C)c3CCC(O)=O)/C(=C2C)CCC(O)=O
OpenEye OEToolkits 1.7.6CCC1=C(C(=CC2=NC(=Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C)CC)C)CCC(=O)O)C(=C2C)CCC(=O)O)NC1=O)C
CACTVS 3.385CCC1=C(C)C(NC1=O)=CC2=NC(=Cc3[nH]c(C=C4NC(=O)C(=C4CC)C)c(C)c3CCC(O)=O)C(=C2C)CCC(O)=O
FormulaC33 H38 N4 O6
Namemesobiliverdin IX(alpha)
ChEMBL
DrugBank
ZINCZINC000086036419
PDB chain8uhe Chain C Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uhe Structure of the antenna complex expressed during far-red light photoacclimation in Synechococcus sp. PCC 7335.
Resolution2.78 Å
Binding residue
(original residue number in PDB)		F58 T65 K74 A77 R80 D81 Y85 Y113 I116 I118 N122 I123 Y126
Binding residue
(residue number reindexed from 1)		F57 T64 K73 A76 R79 D80 Y84 Y112 I115 I117 N121 I122 Y125
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0009579 thylakoid
GO:0016020 membrane
GO:0030089 phycobilisome
GO:0031676 plasma membrane-derived thylakoid membrane

View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8uhe, PDBe:8uhe, PDBj:8uhe
PDBsum8uhe
PubMed38141759
UniProtB4WKI4

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