Structure of PDB 8uh6 Chain C Binding Site BS01

Receptor Information
>8uh6 Chain C (length=277) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MPTTIEREFEELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRD
VSPYDHSRVKLQNAENDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLM
VWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEMLFKETGFSVKLLSEDV
KSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNFLFKVR
ESGSLNPDHGPAVIHCSAGIGRSGTFSLVDTCLVLMEKGDDINIKQVLLN
MRKYRMGLIQTPDQLRFSYMAIIEGAK
Ligand information
Ligand IDWO8
InChIInChI=1S/C46H50ClN7O11S2/c1-46(2)23-32(48-31-9-5-7-29(21-31)40-38(47)39(65-24-37(56)57)41(66-40)43(59)60)16-19-53(46)67(63,64)25-26-6-4-8-30(20-26)49-44(61)52-17-14-27(15-18-52)28-10-11-33-35(22-28)51(3)45(62)54(33)34-12-13-36(55)50-42(34)58/h4-11,20-22,27,32,34,48H,12-19,23-25H2,1-3H3,(H,49,61)(H,56,57)(H,59,60)(H,50,55,58)/t32-,34+/m0/s1
InChIKeyIBRISDNPWJIHLN-UZNNEEJFSA-N
SMILES
SoftwareSMILES
CACTVS 3.385CN1C(=O)N([CH]2CCC(=O)NC2=O)c3ccc(cc13)C4CCN(CC4)C(=O)Nc5cccc(C[S](=O)(=O)N6CC[CH](CC6(C)C)Nc7cccc(c7)c8sc(C(O)=O)c(OCC(O)=O)c8Cl)c5
OpenEye OEToolkits 2.0.7CC1(CC(CCN1S(=O)(=O)Cc2cccc(c2)NC(=O)N3CCC(CC3)c4ccc5c(c4)N(C(=O)N5C6CCC(=O)NC6=O)C)Nc7cccc(c7)c8c(c(c(s8)C(=O)O)OCC(=O)O)Cl)C
OpenEye OEToolkits 2.0.7CC1(C[C@H](CCN1S(=O)(=O)Cc2cccc(c2)NC(=O)N3CCC(CC3)c4ccc5c(c4)N(C(=O)N5[C@@H]6CCC(=O)NC6=O)C)Nc7cccc(c7)c8c(c(c(s8)C(=O)O)OCC(=O)O)Cl)C
CACTVS 3.385CN1C(=O)N([C@@H]2CCC(=O)NC2=O)c3ccc(cc13)C4CCN(CC4)C(=O)Nc5cccc(C[S](=O)(=O)N6CC[C@@H](CC6(C)C)Nc7cccc(c7)c8sc(C(O)=O)c(OCC(O)=O)c8Cl)c5
ACDLabs 12.01O=C1NC(=O)CCC1N1c2ccc(cc2N(C)C1=O)C1CCN(CC1)C(=O)Nc1cccc(c1)CS(=O)(=O)N1CCC(CC1(C)C)Nc1cccc(c1)c1sc(c(OCC(=O)O)c1Cl)C(=O)O
FormulaC46 H50 Cl N7 O11 S2
Name(5P)-3-(carboxymethoxy)-4-chloro-5-(3-{[(4S)-1-({3-[(4-{1-[(3R)-2,6-dioxopiperidin-3-yl]-3-methyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}piperidine-1-carbonyl)amino]phenyl}methanesulfonyl)-2,2-dimethylpiperidin-4-yl]amino}phenyl)thiophene-2-carboxylic acid
ChEMBL
DrugBank
ZINC
PDB chain8uh6 Chain B Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8uh6 Mechanistic insights into a heterobifunctional degrader-induced PTPN2/N1 complex.
Resolution3.3 Å
Binding residue
(original residue number in PDB)
R26 N27 S29 D50 Y54 K122 D182 G221 M256 Q260
Binding residue
(residue number reindexed from 1)
R26 N27 S29 D50 Y54 K122 D182 G221 M256 Q260
Annotation score1
External links
PDB RCSB:8uh6, PDBe:8uh6, PDBj:8uh6
PDBsum8uh6
PubMed39152201
UniProtP17706|PTN2_HUMAN Tyrosine-protein phosphatase non-receptor type 2 (Gene Name=PTPN2)

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