Structure of PDB 8r56 Chain C Binding Site BS01

Receptor Information
>8r56 Chain C (length=671) Species: 592022 (Priestia megaterium DSM 319) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KGVNVEILQDGFEVALNGVVLLQHTIQKPMLFVGHGEETIEMYRGNFDIK
DYVTERTALRYANVEEMEGAYKIDLSNLKNGDTMLSLIVKEEENRLKVEY
QKNDANINRFWLRVAADKQEKVYGCGEQLSHFNMRGKNFPLWTSEPGVGR
NKQTYVTWQADVVDKAGGDYYNTNFPQPTYVSSKKYYCHVETTAYADFDF
RNEAFHELQVWEVPKYMLFETADTYLELVEKITGLFGRQPELPEWVYNGV
VLGIQGGTDVVEQKLEKVLAKGMKVSGVWCQDWQGKRITSFGKRLMWNWK
WNESEYPELDKKIAEWKENDIRFLGYINPYVAIEGDLYKEAEDKGYLALN
TEGNTYLVDFGEFYCGVVDFTNEEATEWYKQVIKENMIDFGLDGWMADFG
EYLPTDVVLKNRIDAKIMHNAWPTMWAKVNYEAVSEAGKLGEIVYFMRAG
YTGIQKYCTLLWGGDQSVDWSLDDGLASVIPAALSSGMIGCGLHHSDIGG
YTSLHGNKRSKELLMRWAEMGAFTPMMRTHEGNRPDDCFQFDGDEETLEH
LARMSNVYVTMAPYIKSLVEENARRGIPVQRPLFMHYEEDEKTYDIQYQY
LFGEDVLVAPVHQENQTEWEVYLPEDQWVHVWSGEAYTGGSVTVQAPLGY
PPVFYRKKSIWSELFSKLIHI
Ligand information
Ligand IDY2W
InChIInChI=1S/C7H15NO6S/c8-4-1-5(9)7(11)6(10)3(4)2-15(12,13)14/h3-7,9-11H,1-2,8H2,(H,12,13,14)/t3-,4+,5-,6+,7+/m0/s1
InChIKeyUVCDOBMNOOKYMK-PJEQPVAWSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C1[C@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O)CS(=O)(=O)O)N
CACTVS 3.385N[C@@H]1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1C[S](O)(=O)=O
OpenEye OEToolkits 2.0.7C1C(C(C(C(C1O)O)O)CS(=O)(=O)O)N
CACTVS 3.385N[CH]1C[CH](O)[CH](O)[CH](O)[CH]1C[S](O)(=O)=O
FormulaC7 H15 N O6 S
Name[(1~{S},2~{R},3~{R},4~{S},6~{R})-6-azanyl-2,3,4-tris(oxidanyl)cyclohexyl]methanesulfonic acid
ChEMBL
DrugBank
ZINC
PDB chain8r56 Chain C Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8r56 Detection of Sulfoquinovosidase Activity in Cell Lysates Using Activity-Based Probes.
Resolution2.45 Å
Binding residue
(original residue number in PDB)
Q289 R302 L303 W305 Y334 M404 D406 F407 W470 D473 Y509 H538
Binding residue
(residue number reindexed from 1)
Q281 R294 L295 W297 Y326 M396 D398 F399 W462 D465 Y501 H530
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.1.-
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process

View graph for
Molecular Function

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Biological Process
External links
PDB RCSB:8r56, PDBe:8r56, PDBj:8r56
PDBsum8r56
PubMed38647177
UniProtD5E1T0

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