Structure of PDB 8qq3 Chain C Binding Site BS01

Receptor Information
>8qq3 Chain C (length=126) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MGRDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGR
YDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWL
LTSGTTEANAWKSTLVGHDTFTKVKP
Ligand information
Ligand IDWKF
InChIInChI=1S/C35H39N7O3S/c43-32(39-25-11-3-7-22-9-5-19-37-29(22)25)35(33(44)40-26-12-4-8-23-10-6-20-38-30(23)26)16-14-24(15-17-35)36-18-2-1-13-28-31-27(21-46-28)41-34(45)42-31/h3-12,19-20,24,27-28,31,36H,1-2,13-18,21H2,(H,39,43)(H,40,44)(H2,41,42,45)/t27-,28-,31-/m0/s1
InChIKeyRCUCAUCKUVJHRT-QYDYLWNGSA-N
SMILES
SoftwareSMILES
CACTVS 3.385O=C1N[CH]2CS[CH](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[CH]2N1
CACTVS 3.385O=C1N[C@H]2CS[C@@H](CCCCNC3CCC(CC3)(C(=O)Nc4cccc5cccnc45)C(=O)Nc6cccc7cccnc67)[C@H]2N1
OpenEye OEToolkits 2.0.7c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7
OpenEye OEToolkits 2.0.7c1cc2cccnc2c(c1)NC(=O)C3(CCC(CC3)NCCCCC4C5C(CS4)NC(=O)N5)C(=O)Nc6cccc7c6nccc7
FormulaC35 H39 N7 O3 S
Name4-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butylamino]-~{N}1,~{N}1'-di(quinolin-8-yl)cyclohexane-1,1-dicarboxamide
ChEMBL
DrugBank
ZINC
PDB chain8qq3 Chain A Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8qq3 An artificial nickel chlorinase based on the biotin-streptavidin technology.
Resolution1.6 Å
Binding residue
(original residue number in PDB)
W120 K121 L124
Binding residue
(residue number reindexed from 1)
W111 K112 L115
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

View graph for
Molecular Function

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Cellular Component
External links
PDB RCSB:8qq3, PDBe:8qq3, PDBj:8qq3
PDBsum8qq3
PubMed38277163
UniProtP22629|SAV_STRAV Streptavidin

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