Structure of PDB 8qeu Chain C Binding Site BS01

Receptor Information
>8qeu Chain C (length=304) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
LKDFLAIDDFDTATIKTILDKASEVKALLKSGERNYLPFKGKSMSMIFAK
PSMRTRVSFETGFFLLGGHALYLGPNDIQMGKREETRDVARVLSRYNDII
MARVFAHQDILDLANYSSVPVVNGLTDHNHPCQIMADALTMIEHIGQVEG
TKVVYVGDGNNMVHSWLELASVIPFHFVCACPKGYEPDKERVSKAKQAGL
SKIEITNDPKEAVIGADVVYSDVWASMGQKDEAEARRKAFQGFQVDEALM
KLAGQKAYFMHCLPAERGVEVTNGVVEAPYSIVFPQAENRMHAQNAIMLH
LLGF
Ligand information
Ligand IDORN
InChIInChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m0/s1
InChIKeyAHLPHDHHMVZTML-BYPYZUCNSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C[C@@H](C(=O)O)N)CN
CACTVS 3.370NCCC[CH](N)C(O)=O
CACTVS 3.370NCCC[C@H](N)C(O)=O
ACDLabs 12.01O=C(O)C(N)CCCN
OpenEye OEToolkits 1.7.6C(CC(C(=O)O)N)CN
FormulaC5 H12 N2 O2
NameL-ornithine
ChEMBLCHEMBL446143
DrugBankDB00129
ZINCZINC000001532530
PDB chain8qeu Chain C Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB8qeu Structural analysis and molecular substrate recognition properties of Arabidopsis thaliana ornithine transcarbamylase, the molecular target of phaseolotoxin produced by Pseudomonas syringae
Resolution1.5 Å
Binding residue
(original residue number in PDB)		N232 D293 S297 M298 L334
Binding residue
(residue number reindexed from 1)		N161 D222 S226 M227 L263
Annotation score5
Enzymatic activity
Enzyme Commision number 2.1.3.3: ornithine carbamoyltransferase.
Gene Ontology
Molecular Function
GO:0004585 ornithine carbamoyltransferase activity
GO:0016597 amino acid binding
GO:0016743 carboxyl- or carbamoyltransferase activity
Biological Process
GO:0006520 amino acid metabolic process
GO:0006591 ornithine metabolic process

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Molecular Function
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Biological Process
External links
PDB RCSB:8qeu, PDBe:8qeu, PDBj:8qeu
PDBsum8qeu
PubMed38179474
UniProtO50039|OTC_ARATH Ornithine transcarbamylase, chloroplastic (Gene Name=OTC)

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