Structure of PDB 8pjp Chain C Binding Site BS01

Receptor Information
>8pjp Chain C (length=125) Species: 30538 (Vicugna pacos) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QLQLVESGGGLVQPGGSLRLSCAASGFTLDQYAIGWFRQAPGKEREGVSC
ISSRGGATNYAHSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAAGV
YTIVTGTGPEDGMDYWGKGTLVTVS
Ligand information
Ligand IDWKE
InChIInChI=1S/C11H20N2O7/c1-4-7(13-10(18)6(16)3-14)9(17)8(11(19)20-4)12-5(2)15/h4,6-9,11,14,16-17,19H,3H2,1-2H3,(H,12,15)(H,13,18)/t4-,6-,7-,8-,9+,11-/m1/s1
InChIKeyZAABMPWLDGVWSW-VQYCFQGSSA-N
SMILES
SoftwareSMILES
CACTVS 3.385C[CH]1O[CH](O)[CH](NC(C)=O)[CH](O)[CH]1NC(=O)[CH](O)CO
CACTVS 3.385C[C@H]1O[C@@H](O)[C@H](NC(C)=O)[C@@H](O)[C@@H]1NC(=O)[C@H](O)CO
OpenEye OEToolkits 2.0.7CC1C(C(C(C(O1)O)NC(=O)C)O)NC(=O)C(CO)O
OpenEye OEToolkits 2.0.7C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)NC(=O)C)O)NC(=O)[C@@H](CO)O
FormulaC11 H20 N2 O7
Name(2~{R})-~{N}-[(2~{R},3~{S},4~{S},5~{R},6~{R})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide
ChEMBL
DrugBank
ZINC
PDB chain8pjp Chain A Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8pjp Cryo-EM structures of type IV pili complexed with nanobodies reveal immune escape mechanisms.
Resolution2.92 Å
Binding residue
(original residue number in PDB)
S54 S55 R56 G58
Binding residue
(residue number reindexed from 1)
S52 S53 R54 G56
Annotation score1
External links