Structure of PDB 8p5y Chain C Binding Site BS01

Receptor Information
>8p5y Chain C (length=123) Species: 1895 (Streptomyces avidinii) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RDQAGITGTWYNQLGSTFIVTAGADGALTGTYESAVGNAESRYVLTGRYD
SAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQYVGGAEARINTQWLLT
YGTTEANAWMSTLVGHDTFTKVK
Ligand information
Ligand IDWZQ
InChIInChI=1S/C21H31N5O3S/c27-19(6-2-1-5-18-20-16(13-30-18)25-21(28)26-20)23-8-7-22-11-15-10-14-4-3-9-29-17(14)12-24-15/h10,12,16,18,20,22H,1-9,11,13H2,(H,23,27)(H2,25,26,28)/t16-,18-,20-/m0/s1
InChIKeyMHAGGLFGLHLTFP-QRFRQXIXSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7c1c2c(cnc1CNCCNC(=O)CCCC[C@H]3[C@@H]4[C@H](CS3)NC(=O)N4)OCCC2
CACTVS 3.385O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCNCc3cc4CCCOc4cn3
OpenEye OEToolkits 2.0.7c1c2c(cnc1CNCCNC(=O)CCCCC3C4C(CS3)NC(=O)N4)OCCC2
CACTVS 3.385O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCNCc3cc4CCCOc4cn3
FormulaC21 H31 N5 O3 S
Name5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-[2-(3,4-dihydro-2~{H}-pyrano[2,3-c]pyridin-6-ylmethylamino)ethyl]pentanamide
ChEMBL
DrugBank
ZINC
PDB chain8p5y Chain C Residue 201 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8p5y Manganese Transfer Hydrogenases Based on the Biotin-Streptavidin Technology.
Resolution1.88 Å
Binding residue
(original residue number in PDB)
S27 Y43 S45 V47 G48 N49 W79 T90 W108 L110 Y112 D128
Binding residue
(residue number reindexed from 1)
S16 Y32 S34 V36 G37 N38 W68 T79 W97 L99 Y101 D117
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005576 extracellular region

View graph for
Molecular Function

View graph for
Cellular Component
External links
PDB RCSB:8p5y, PDBe:8p5y, PDBj:8p5y
PDBsum8p5y
PubMed37671593
UniProtP22629|SAV_STRAV Streptavidin

[Back to BioLiP]