Structure of PDB 8opo Chain C Binding Site BS01

Receptor Information
>8opo Chain C (length=1195) Species: 290028,559292 [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VIGDFNCTNFAINDLNTTIPRISEYVVDVSYGLGTYYILDRVYLNTTILF
TGYFPKSGANFRDLSLKGTTKLSTLWYQKPFLSDFNNGIFSRVKNTKLYV
NKTLYSEFSTIVIGSVFINNSYTIVVQPHNGVLEITACQYTMCEYPHTIC
KSIGSSRNESWHFDKSEPLCLFKKNFTYNVSTDWLYFHFYQERGTFYAYY
ADSGMPTTFLFSLYLGTLLSHYYVLPLTCNAISSNTDNETLQYWVTPLSK
RQYLLKFDDRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKP
VATVHRRIPDLPDCDIDKWLNNFNVPSPLNWERKIFSNCNFNLSTLLRLV
HTDSFSCNNFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLGSSGFLQSSN
YKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGFNNFNLSSHSVVYS
RYCFSVNNTFCPCAKPSFASSCKSHKPPSASCPIGTNYRSCESTTVLDHT
DWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSY
NVSCLCSTDAFLGWSYDTCVSNNRCNIFSNFILNGINSGTTCSNDLLQPN
TEVFTDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDFNGNIIGFKDF
VTNKTYNIFPCYAGRVSAAFHQNASSLALLYRNLKCSYVLNNISLATQPY
FDSYLGCVFNADNLTDYSVSSCALRMGSGFCVDYNSYRFVTFEPFNVSFV
NDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAAC
HDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNL
HFDVDNINFKSLVGCLGPHCGSSSRSFFEDLLFDKVKLSDVGFVEAYNNC
TGGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAAA
GIPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNSA
LAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQID
RLINGRLTALNAYVSQQLSDISLVKLGAALAMEKVNECVKSQSPRINFCG
NGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGDVGIAPKQG
YFIKHNDHWMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYL
Ligand information
Ligand ID5N6
InChIInChI=1S/C13H21NO10/c1-5(15)14-9-7(17)3-13(22,12(20)21)24-11(9)10(19)8(18)4-23-6(2)16/h7-11,17-19,22H,3-4H2,1-2H3,(H,14,15)(H,20,21)/t7-,8+,9+,10+,11+,13+/m0/s1
InChIKeyNYWZBRWKDRMPAS-CTAKWSDESA-N
SMILES
SoftwareSMILES
CACTVS 3.385CC(=O)N[CH]1[CH](O)C[C](O)(O[CH]1[CH](O)[CH](O)COC(C)=O)C(O)=O
OpenEye OEToolkits 2.0.4CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](COC(=O)C)O)O)(C(=O)O)O)O
OpenEye OEToolkits 2.0.4CC(=O)NC1C(CC(OC1C(C(COC(=O)C)O)O)(C(=O)O)O)O
CACTVS 3.385CC(=O)N[C@@H]1[C@@H](O)C[C@@](O)(O[C@H]1[C@H](O)[C@H](O)COC(C)=O)C(O)=O
FormulaC13 H21 N O10
Name9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid;
(2~{R},4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{R})-3-acetyloxy-1,2-bis(oxidanyl)propyl]-2,4-bis(oxidanyl)oxane-2-ca rboxylic acid;
9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulosonic acid;
9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-D-galacto-non-2-ulosonic acid;
9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-galacto-non-2-ulosonic acid
ChEMBL
DrugBank
ZINC
PDB chain8opo Chain O Residue 2 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8opo Sialoglycan binding triggers spike opening in a human coronavirus
Resolution3.6 Å
Binding residue
(original residue number in PDB)
T30 K80 T82
Binding residue
(residue number reindexed from 1)
T17 K67 T69
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003700 DNA-binding transcription factor activity
Biological Process
GO:0006355 regulation of DNA-templated transcription
GO:0019062 virion attachment to host cell
GO:0019064 fusion of virus membrane with host plasma membrane
GO:0039654 fusion of virus membrane with host endosome membrane
GO:0046718 symbiont entry into host cell
GO:0046813 receptor-mediated virion attachment to host cell
GO:0075509 endocytosis involved in viral entry into host cell
Cellular Component
GO:0016020 membrane
GO:0019031 viral envelope
GO:0020002 host cell plasma membrane
GO:0044173 host cell endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0055036 virion membrane

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:8opo, PDBe:8opo, PDBj:8opo
PDBsum8opo
PubMed37794193
UniProtE0YJ44;
P03069|GCN4_YEAST General control transcription factor GCN4 (Gene Name=GCN4)

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