Structure of PDB 8ofi Chain C Binding Site BS01

Receptor Information
>8ofi Chain C (length=415) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MLQPGVNKFSLRMFGSQKAVEREQERVKSHPYSDFRFYWDLTMLLLMVGN
LIIIPVGITFFKPWIVFNVVSDTFFLIDLVLNSWFVVDFVSSIPVDYIFL
IVELRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVN
LIGMMLLLCHWDGCLQFLVPMLQDFPDDCWVSLNNMVNNSWGKQYSYALF
KAMSHMLCIGYGRQAPMGMSDVWLTMLSMIVGATCYAMFIGHATALIQSL
DSSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESIL
GELSEPLREEIINFNCRKLVASMDPNFVTSMLTKLRFEVFQPGDYIIGKK
MYFIQHGVVSVLTKGNKETKLADGSYFGEICSVRADTYCRLYSLSVDNFN
EVLEEYPMMRRAFET
Ligand information
Ligand IDVNZ
InChIInChI=1S/C27H36N2O5/c1-28(17-21-11-20-14-25(33-4)26(34-5)16-22(20)21)8-6-9-29-10-7-18-12-23(31-2)24(32-3)13-19(18)15-27(29)30/h12-14,16,21H,6-11,15,17H2,1-5H3/t21-/m1/s1
InChIKeyACRHBAYQBXXRTO-OAQYLSRUSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)C[C@H]3Cc4c3cc(c(c4)OC)OC
CACTVS 3.385COc1cc2CCN(CCCN(C)C[C@H]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC
CACTVS 3.385COc1cc2CCN(CCCN(C)C[CH]3Cc4cc(OC)c(OC)cc34)C(=O)Cc2cc1OC
OpenEye OEToolkits 2.0.7CN(CCCN1CCc2cc(c(cc2CC1=O)OC)OC)CC3Cc4c3cc(c(c4)OC)OC
FormulaC27 H36 N2 O5
NameIvabradine;
3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1,3,5-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one;
3-[3-[[(7S)-3,4-dimethoxy-7-bicyclo[4.2.0]octa-1(6),2,4-trienyl]methyl-methyl-amino]propyl]-7,8-dimethoxy-2,5-dihydro-1H-3-benzazepin-4-one
ChEMBL
DrugBank
ZINC
PDB chain8ofi Chain C Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8ofi Structural determinants of ivabradine block of the open pore of HCN4.
Resolution3.6 Å
Binding residue
(original residue number in PDB)
C479 Y507 I511
Binding residue
(residue number reindexed from 1)
C208 Y236 I240
Annotation score1
External links