Structure of PDB 8j56 Chain C Binding Site BS01

Receptor Information

>8j56 Chain C (length=160) Species: 106590 (Cupriavidus necator) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KSVLQDANQTQLAIELIGLGARLQVLEAETTLSRDRLIRLYKELRGVSPP
KGMLPFSTDWFTTWLPNIHSSLFFSAYQFMVQEGETVGIRAVVAAYRLYL
EHVSLLGGEIVLSFTRAWTLVRFFESNMLQLSRCTCCGGQFVTHAYEPHA
NFVCSLCRPP

Ligand information

Ligand ID

InChI

InChI=1S/Zn/q+2

InChIKey

PTFCDOFLOPIGGS-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Zn++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Zn+2]

Formula

Name

ZINC ION

PDB chain

8j56 Chain C Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8j56 Hexameric structure of the flagellar master regulator FlhDC from Cupriavidus necator and its interaction with flagellar promoter DNA.
Resolution	3.5 Å
Binding residue (original residue number in PDB)	C155 C158 C175 C178
Binding residue (residue number reindexed from 1)	C134 C137 C154 C157
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003677	DNA binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

	Biological Process
GO:0006355	regulation of DNA-templated transcription
GO:0044781	bacterial-type flagellum organization
GO:0045893	positive regulation of DNA-templated transcription
GO:1902208	regulation of bacterial-type flagellum assembly

	Cellular Component
GO:0005737	cytoplasm

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Cellular Component

External links

PDB	RCSB:8j56, PDBe:8j56, PDBj:8j56
PDBsum	8j56
PubMed	37343320
UniProt	Q0K4N7

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