Structure of PDB 8iby Chain C Binding Site BS01

Receptor Information
>8iby Chain C (length=793) Species: 7091 (Bombyx mori) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSRQKRRAEYARVQELYKKCRSRAAAEVIDGACGGVGHSLEEMETYWRPI
LERVSDAPGPTPEALHALGRTQLWKPISVEEIKASRFDWRTSPGPDGIRS
GQWRAVPVHLKAEMFNAWMARGEIPEILRQCRTVFVPKVERPGGPGEYRP
ISIASIPLRHFHSILARRLLACCPPDARQRGFICADGTLENSAVLDAVLG
DSRKKLRECHVAVLDFAKAFDTVSHEALVELLRLRGMPEQFCGYIAHLYD
TASTTLAVNNEMSSPVKVGRGVRQGDPLSPILFNVVMDLILASLPERVGY
RLEMELVSALAYAYDLVLLAGSKVGMQESISAVDCVGRQMGLRLNCRKSA
VLSMIPDGHRKKHHYLTERTFNIGGKPLRQVSCVERWRYLGVDFEASGCV
TLEHSISSALNNISRAPLKPQQRLEILRAHLIPRFQHGFVLGNISDDRLR
MLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATIPDLIVRR
FGGLDSSPWSVARAAAKSDKIRKKLRWAWKQLRRFSRVDSTTQRPSVRLF
WREHLHASVDGRELRESTRTPTSTKWIRERCAQITGRDFVQFVHTHINAL
PSRIRGSRGRRGGGESSLTCRAGCKVRETTAHILQQCHRTHGGRILRHNK
IVSFVAKAMEENKWTVELEPRLRTSVGLRKPAIIASRDGVGVIVDVQVVS
GQRSLDELHREKRNKYGNHGELVELVAGRLGLPKAECVRATSCTISWRGV
WSLTSYKELRSIIGLREPTLQIVPILALRGSHMNWTRFNQMTS
Ligand information
>8iby Chain E (length=198) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uguacacgugguaaacacgugacagcagccccgauggacggaccgcgagg
accgucaagccuagcagguaccuucggguggggccuugcgauaccugcgg
gcgaacccuguggucggguuugcagcccggccacauuuuccuguugcaaa
aaagucaaauaaagaaaaacugugcgggguuccguuggaccugccagu
.<<.<<<<<<.....>>>>>>...>>.(((((....<<<<<.<<....>>
.>>>>>..<<<<.<<<<<<<<<<..>>>.))))).......>>>>>>>>>
>>.......<<<<<<<<<<.....>>>>>>>>>>..<<<<.<<<<<....
....>..>>>>..>>>>.<<<<.<<<<.............>>>>>>>>
Receptor-Ligand Complex Structure
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PDB8iby Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon.
Resolution3.47 Å
Binding residue
(original residue number in PDB)		S306 R310 R311 Y314 I354 R357 G460 R661 C697 E699 H718 K733 D761 R764 M765 K786 K837 A896 R901 G956 N963 K971 E974 R1093 M1097
Binding residue
(residue number reindexed from 1)		S2 R6 R7 Y10 I50 R53 G146 R347 C383 E385 H404 K419 D447 R450 M451 K472 K523 A582 R587 G642 N649 K657 E660 R779 M783
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003964 RNA-directed DNA polymerase activity
Biological Process
GO:0006278 RNA-templated DNA biosynthetic process
GO:0071897 DNA biosynthetic process

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Molecular Function
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Biological Process
External links
PDB RCSB:8iby, PDBe:8iby, PDBj:8iby
PDBsum8iby
PubMed37301196
UniProtV9H052

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